Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02501 ATGGCTGATGAATCAGTCCCCAGTGATTCCTCCCACGCCACTCCACCGCCGGAGAGCAAGCCACTGGCACCGGCGCATAAAAGTTGGGCCGATGAAGCAGAGGAGGACGTTCTTGAGGAAACTATTGGGCCTTCGAGTTCAGCTCCAGCCTCGTCGCTTAACGTTGACGGATTAGCTATAGAcgagaacaagaaagaagctAAAGCTAAGTTTTTGGATGAACCCGATGATGCCAACGTCAAGGCGATTACATCTGGTGATACACCGTATAATTCAGCGAACACCTTTGAAGATTTAAATCTCTCTCCAGAGCTGCTAAAGGGATTATATGTTGAGATGAAGTTTCAGAAGCCTAGCAAAATTCAAGCTATCAGCTTGCCAATGATATTGAGCCCACCTTTTAAGGATCTGATAGCCCAAGCACATAATGGTTCTGGCAAGACAACATGTTTTGTGCTTGGAATGTTGAGTCGCGTTGATCCTAAGCAGCAAGCTCCTCAGGCTCTTTGCATTTGTCCAACAAGAGAATTGGCTCTTCAGAATACTGAAGTCCTTCGAAAGATGGGAAAATACACGGGGATCAGTTCAGAATGTGCCATACCAGCAGATAGCCGAGATTCTATTCCAATATCAAAACGAGCCCCGATCATGGCACAAGTAGTGATTGGGACCCCTGGCACGATTAAGAAGTGGTTGACATTTAAGAAACTAAGTGTGAGCAGattaaaaattcttgtttttgatGAAGCCGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCCTTGAGGataatgaaagaaatagaaagggTCAATCCTCAGTGTCAGgttcttcttttttccgcTACATTTAATGAAACGGTCAAGAATTTTGTATCAAGGACCGTTAAAACGGACCACAATAAACTTTTTGTGAAGACAGAAGAGCTATCTTTAGAGGCGGTGAAGCAATACAAGGTGAACTGTATTGATGAACTCTCTAAGATTGAAGTGATCaaagattatatatttgaaattggaGAGAATGTAGGGCAAACTATTATATTCGTCCGTACCAGAAATAGTGCAAAGATGTTGCATAAATCACTTGTTGATATGGGCTATGGGGTTACTTCCATACAAGGAGCTCTTGAACATGATGAGAGAGACAAGATAGTCAAGGAGTTCAGGGATGGTTTGACTCAAGTGCTTATATCAACTGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCAGTGAAATATACTGCAGAGTATACCCGTGAACCTGAGCCCGATTACGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGTCGCAAGGGGGCTGTGTTTAACCTGATATGTGGGGATAGGGATGAAAAGGTCATGCAGAAGATAGGGAAGCATTTTGGCACCCAAGTAACTGAGGTCCCAGAAAAAAGTGTTGAAGCCTATAAAGCCGCACTAAAGGAGGCTGGTTTACTTCAGTG 1511 0.413 MADESVPSDSSHATPPPESKPLAPAHKSWADEAEEDVLEETIGPSSSAPASSLNVDGLAIDENKKEAKAKFLDEPDDANVKAITSGDTPYNSANTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPKQQAPQALCICPTRELALQNTEVLRKMGKYTGISSECAIPADSRDSIPISKRAPIMAQVVIGTPGTIKKWLTFKKLSVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIERVNPQCQVLLFSATFNETVKNFVSRTVKTDHNKLFVKTEELSLEAVKQYKVNCIDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKSLVDMGYGVTSIQGALEHDERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICGDRDEKVMQKIGKHFGTQVTEVPEKSVEAYKAALKEAGLLQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02501 503 Gene3D - 73 310 IPR027417 -
Bva04g02501 503 Pfam Helicase conserved C-terminal domain 330 452 IPR001650 -
Bva04g02501 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 468 IPR027417 -
Bva04g02501 503 Pfam DEAD/DEAH box helicase 120 292 IPR011545 GO:0003676|GO:0005524
Bva04g02501 503 SMART ultradead3 114 320 IPR014001 -
Bva04g02501 503 CDD SF2_C_DEAD 317 461 - -
Bva04g02501 503 CDD DEADc_DDX19_DDX25 101 305 - -
Bva04g02501 503 Gene3D - 311 500 IPR027417 -
Bva04g02501 503 SMART helicmild6 359 452 IPR001650 -
Bva04g02501 503 PANTHER DEAD-BOX HELICASE DBP80 73 483 - -
Bva04g02501 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 492 IPR001650 -
Bva04g02501 503 MobiDBLite consensus disorder prediction 1 54 - -
Bva04g02501 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 123 IPR014014 GO:0003724
Bva04g02501 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 304 IPR014001 -
Bva04g02501 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 73 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02501 Bva-Chr4 22663001 22666661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02501 93 485 Eukaryotic Initiation Factors Gene Family AT1G72730 36.409 5.05e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02501 K18655 - gmx:100778091 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02501 04 22663001 22666661 Bva04g02501 04 22663001 22666661 ECH