Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02490 ATGGATTGGAATGGGAGCATTAGACCATTTGTTCCTCGAGCAGATTCTTCCTTAAGCTTCCTCTACAACTATAACTACAGTCCATATCCAGGAATGGAAGTGAAACATTCAGCATTAGCTGAGACACCACAAGGGTTCCTCCTCTCAGTGGACAAAATGAACTATGGAAACCAgctggagaagaagaagcgATTAACAGTTGATCAACTTGACTCGCTGGAGAGGAGTTTCCAGGAGGAGTTAAAGTTGGACCCAGATAGGAAGATGAAGCTTTCCAGGGAGCTGGGGCTCCAGCCTCGCCAGATTGCAGTTTGGTTCCAAAATAGGCGCGCAAGGTGGAAGACTAAGCAGCTCGAAAACTCGTACGATGCACTCAGACAGGAATTTGATGTCATCTCCAAGGAAAACCAGAAGCTTCAAGAAGAGGTAACGAAGTTGAGGGCTGTGCTGAGACAGCAAACTTGTAGAGCGCAGGCATCTGCAGGTTATACAGAAATCTCTGGAGATGAAACAGTAGAAAGCTCGTCAGAGGCCATGCCTAGCTCTAGCAAGCAGGTTGCAGAGGGAAACTATTCTTTCACTGTGGATGATTATAACACTGTTTCACTGCCCTACTGGGCTGGTGTGCCTCATTATCCCTA 641 0.454 MDWNGSIRPFVPRADSSLSFLYNYNYSPYPGMEVKHSALAETPQGFLLSVDKMNYGNQLEKKKRLTVDQLDSLERSFQEELKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKTKQLENSYDALRQEFDVISKENQKLQEEVTKLRAVLRQQTCRAQASAGYTEISGDETVESSSEAMPSSSKQVAEGNYSFTVDDYNTVSLPYWAGVPHYP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02490 213 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 204 - -
Bva04g02490 213 MobiDBLite consensus disorder prediction 160 186 - -
Bva04g02490 213 Gene3D - 60 121 - -
Bva04g02490 213 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Bva04g02490 213 SUPERFAMILY Homeodomain-like 47 118 IPR009057 -
Bva04g02490 213 Coils Coil 108 156 - -
Bva04g02490 213 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Bva04g02490 213 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Bva04g02490 213 SMART HOX_1 58 120 IPR001356 GO:0003677
Bva04g02490 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 204 IPR045224 GO:0003700
Bva04g02490 213 CDD homeodomain 61 117 IPR001356 GO:0003677
Bva04g02490 213 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Bva04g02490 213 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Bva04g02490 213 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02490 Bva-Chr4 22613039 22615882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02490 16 146 Homeobox Transcription Factor Family AT5G03790 56.738 5.34e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva04g02490 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02490 - - vvi:100251028 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02490 04 22613039 22615882 Bva13g02064 13 16384208 16385893 BWGD
Bva04g02490 04 22613039 22615882 Bva04g02490 04 22613039 22615882 ECH