Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02480 atggaagaaaaggaaagcacTGTTTCTGGGTCACCCGGAAACACAGAGTCCGGGTCACCCATAAGTGCCTCCGTACCCCAGGTAATGAACATGGCGAACATGGAGAATAATGTCGGGGCGGCAGTTGCAGCAGCGGCCCCAGCAACAATAGCAACGCCGGCAAGTACCGGAGGAGGAGGAGGCAGCTTTGACTTgtttgggaaaaagaaaagagggaggCCAAGAAAATACGACGCAGATGGGAACTTGAGGTTGGCATACCATAGTGCACCGCAGGCAGCAACTGGGTTTTCTTTGTCTCCGGGTTCAGCTTCAGATTTCTCTTCCAAAAGGGGTCGAGGGAGGCCTCGTGGTTCTGGCAACTGGCAGCTGCTTGCATCTTTAGGTGATTTGTTTGCAATCACGGCTGGTGGGGATTTTATACCTCATGTGGTGACTGTTCATACTGGAGAGGATGTTGCTGGAAAAATTCTTCAGTTCGCCCAAAAAGGTCCTAGAGGAATATGCATTCTTTCTGCAAATGGAGCTATTTCCAATGTTACTTTAAGGCAACCTGGTTCATCTGGTGGCTTATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGGTCATCCAGAGTCGCTGACAATGGTGGCATAAAAAGTAGGACTGTTGGGTTGAGTGTTTCACTTGCTGGCCCTGATGGTCGCGTGATAGGAGGTGGTGTTGCTGGTTTATTAACTGCTGCTAGCCCAATCCAAATTGTTATGGGAAGCTTCATGCCAGTTGGTCATAAGACTCAAAAAAAGAAGCAGCATCGTGAACATACGGTGGCGTCCCCTATTTCAGTTGCTCCAGATACAGTAACAGCAGCAAAACCCATCTCACAAGCAAATCCTGATAGTAGAAACTGTTTGTCTCAGTTACCAGAACCAGAACCAGAACAAAACATGAGAGTATCTGATATCTTTACCAGCAGTGAAAAATTCAACTTAGATGAAACACCAAATATTGCTCACTGGAGTGGTACTGGCGAATTATCAGATCAGAGGATATCCCCAGACATCAATATATCTTTACCTGGTGACGAGAATTTTTA 1085 0.447 MEEKESTVSGSPGNTESGSPISASVPQVMNMANMENNVGAAVAAAAPATIATPASTGGGGGSFDLFGKKKRGRPRKYDADGNLRLAYHSAPQAATGFSLSPGSASDFSSKRGRGRPRGSGNWQLLASLGDLFAITAGGDFIPHVVTVHTGEDVAGKILQFAQKGPRGICILSANGAISNVTLRQPGSSGGLLTYEGRFEILSLSGSSRVADNGGIKSRTVGLSVSLAGPDGRVIGGGVAGLLTAASPIQIVMGSFMPVGHKTQKKKQHREHTVASPISVAPDTVTAAKPISQANPDSRNCLSQLPEPEPEQNMRVSDIFTSSEKFNLDETPNIAHWSGTGELSDQRISPDINISLPGDENF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02480 361 MobiDBLite consensus disorder prediction 291 306 - -
Bva04g02480 361 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Bva04g02480 361 SMART AT_hook_2 68 80 IPR017956 GO:0003677
Bva04g02480 361 ProSiteProfiles PPC domain profile profile. 137 280 IPR005175 -
Bva04g02480 361 MobiDBLite consensus disorder prediction 7 23 - -
Bva04g02480 361 MobiDBLite consensus disorder prediction 51 77 - -
Bva04g02480 361 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 6 356 - -
Bva04g02480 361 MobiDBLite consensus disorder prediction 1 23 - -
Bva04g02480 361 MobiDBLite consensus disorder prediction 330 361 - -
Bva04g02480 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 6 356 IPR039605 GO:0003680
Bva04g02480 361 MobiDBLite consensus disorder prediction 330 350 - -
Bva04g02480 361 MobiDBLite consensus disorder prediction 96 118 - -
Bva04g02480 361 Gene3D - 142 275 - -
Bva04g02480 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Bva04g02480 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 262 - -
Bva04g02480 361 CDD DUF296 142 255 IPR005175 -
Bva04g02480 361 MobiDBLite consensus disorder prediction 291 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02480 Bva-Chr4 22566440 22570285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02480 68 305 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.590 1.56e-67 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02480 - - vvi:100254577 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02480 04 22566440 22570285 Bva04g02480 04 22566440 22570285 ECH