Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02473 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGGGAAGCTCTCAAGGTTTCCCCCGGAGACAATAAGATCTTGCATCTTTCACAGGCATCCCTGGGTGAGGTCAAGAAGGATAAAGGAAGTGAACCAGTCTCCTTGTTTGTGAAGTTTGGTGATCAGAAGCTTGGACTAGGAATGCTTTCTTCTGAGAAATTTCCACAGATATCTTTTGATTTGGTGTTTGAGAAGGAATTTGAGTTATCTCATAATTGTAAAAATGGGAGTGTGTACTTTGTCGGATATAAAGCCAGAGGAAGTACGGAGGATGAATTTTCTGATGATTCTGaGTTTGAAGATGATGTAATTCCATTTGGTGCTCTGAATAATgATTCCCAGGTTAAGCAAGAAAGCAAGCCAGATGCAAATGCAGGTGTACAAAAGGCAAATAATCTGAAGGCAGGGGATCCTAAAAAGGATGGCAAAACCAATCAAAAGGAGGACGATGACAGTGAAGATGAGGAAGATTCCTCTGAAGATGAATCTGATGAGGATTCTGATGAAGATGTGCCTATGTTGAAAGGAGTGACAGGAAGCGAAGATGAAGATGACAGTGATGATGATAACgacgatgatgatgatgaaagtgAGGATGAAGAGACACCCAAGACGGCTGAAGCAAGCAAGAAGAGGCCAATGGAATCTGCTAAGAAAACGCCTCAGCCAGAGAAGAAGGCAAAACTGGTTACTCCACAAAAGACCGATGTCAAGAGAGGCGTGCCTCATGTTGCAACTCCTCATCCTTCTAAGGGGGCTGGGAAGGCAGCTGCGTCTAAGAAGGACCAGGCAAAGCAGCAGACTCCGAAGTCTGGTGGAGATTACACATGTACACCTTGCAACAGGTCATTTAAGACAGACGATGCACTACAATCTCATAATAGGGCCAAGCACAGTGCTAAGTA 935 0.4299 MEFWGVEVKSGEALKVSPGDNKILHLSQASLGEVKKDKGSEPVSLFVKFGDQKLGLGMLSSEKFPQISFDLVFEKEFELSHNCKNGSVYFVGYKARGREDEFSDDSEFEDDVIPFGALNNDSQVKQESKPDANAGVQKANNLKAGDPKKDGKTNQKEDDDSEDEEDSSEDESDEDSDEDVPMLKGVTGSEDEDDSDDDNDDDDDESEDEETPKTAEASKKRPMESAKKTPQPEKKAKLVTPQKTDVKRGVPHVATPHPSKGAGKAAASKKDQAKQQTPKSGGDYTCTPCNRSFKTDDALQSHNRAKHSAK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02473 310 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 306 - -
Bva04g02473 310 MobiDBLite consensus disorder prediction 212 242 - -
Bva04g02473 310 ProSitePatterns Zinc finger C2H2 type domain signature. 286 307 IPR013087 -
Bva04g02473 310 MobiDBLite consensus disorder prediction 190 211 - -
Bva04g02473 310 MobiDBLite consensus disorder prediction 270 296 - -
Bva04g02473 310 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Bva04g02473 310 Gene3D Nucleoplasmin core domain 1 99 - -
Bva04g02473 310 MobiDBLite consensus disorder prediction 119 135 - -
Bva04g02473 310 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 306 - -
Bva04g02473 310 MobiDBLite consensus disorder prediction 117 310 - -
Bva04g02473 310 MobiDBLite consensus disorder prediction 157 178 - -
Bva04g02473 310 SUPERFAMILY beta-beta-alpha zinc fingers 278 306 IPR036236 -
Bva04g02473 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 310 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02473 Bva-Chr4 22540663 22543784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02473 1 309 C2H2 Transcription Factor Family AT5G03740 41.987 6.24e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02473 NPL 2.1e-09 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02473 - - ccaj:109796568 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02473 04 22540663 22543784 Bva04g02473 04 22540663 22543784 ECH