Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02468 ATGGAGAACTCGCGTAGATCGTTTGATAGATCGAGGGAAGCAGGAGTAAAGAAACCCCGATTAACGGACGAACTCGAGCGCGTCCCAAATTCCAGCATCCGACAGTTTCCTCAGCGACAAGGGGGTTCTGGGGTTAATACGTTTGCATCAGCAAGGTTTAGGACGAATGATAGAGATTCTGAAAGCAGTGATTCGGGTCGTGGTGGATACCAACCTCAGCAGCCACTGCATCAAGAGCTTGTAGCTCAGTATAAAACGGCCCTTGCTGAGCTGACATTCAATTCGAAGCCCATAATTACCAACTTGACTATAATTGCAGGCGAGAACCTTTATGCAGCAAAGGCAATTGCTGCCACTGTCTGTGCTAACATTATAGAGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATCGGGCAggattatataaaatactttGCTGCCAGACTTCCTGAGGTATTCTGCAAGGCATATAGACAAGTAGATCCTTCAGTCCATCAAAGTATGAGGCATCTCTTTGGAACATGGAGAGGAGTTTTTCCTCCTCCAACCCTTCAGATGATTGAGAAAGAACTTGGCTTCACTCCTGCAGTCAATGATTCGTCCTCTTCTACGATGAAGAGCAATTCGCCATCACAACGTCCGCCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGACTTCAGCAGTCTACCAGGACTAAAGGAGTAGCTAATGATACGACGGGTGTTGTTGCAAATTCAACTGAGGATGCAGAGCGACCTGATAGAGCTTTGGGCGGTGGACGGCCTTGGGCAGATCCCTCTGTTAACATACATAACATTCAGCGGTCTCATAGAGATGCATTTAATGATTCCATTCCTGAAAAGAGCTCTCCTGCATCCTATGTAGGCAATGAATATAATTCTGACCTGTCTAGGAATTTGGGCTTGGGTATTGGAAGAACTGGTGGTAGGGTTTCTGAGTTAGGACATGAGAAAGCTTGGTATAAAGCTTATGGTGGTGGTGTTGCAGAGACAATAGCTGGCCAAAGAAATGGTTTTAGTGTGAAGCATGGTCTGTTGAATCATGAAGGTCCTAAGTCCATGAATTTGGATGCGAACCATCAGACAACAGAAAACTTAACTAGCTTAAAAAGCAACGTGATGTCAAGTAGCTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGGTATGAACTCTGGATTGACTGATCGTGGTGCATCTAATATTCCTAGCAGcttgaataaaaatcattGGACAGCtgataatgaaaatttgGAAGTTGAAGATCAACTCCCAATCCCTCGCCATTTTAGGGCAAAGGAGCAGCAGTCAATTGATGAGCTAGATCGTAGGCCAGGTCACTCAGAAGACTATGTATCCAATCTTGGTGATTTACCGACCAATTCTTTAGTCAGGATTGGGAATCGACCTTTCCTGCCAAATGCAACAACAGGGTCAGCAGGAATAGCTGGACAGCTGCAATTTTCTGTGAGAGCTGGCTCCCCCTCTGGGCAGTCACCTTTGAGACAGCAGTCTCCATCACCTCCAGTACCTATGCGCCATCCACCTAATCCATTGCGGAACATGGCTGAGGAAGACCGCTCACAGACTCTTAAAACATCTCAATTCTCTGGGAGTCTGCAGAGCAAACATTTTCGGGATCCTTCACCTGTTCCTCCTCCTAATGTTAAAGTCAGTAACTTGCGAAGGTCGCAGCAAAAGGATCCACGAATTCCATTATCTTCAGGGACTTCTTTTCCGCAGAGACATCACAGTGCACCTTTGCAGCAGCAGGAACTGGGCTCCTCTGACAGTGGAGTTTCTGATAAGACTGAGAAGCAACCCCAGTCTGAAGTTACTCTAGCTGCAGAAACTTCAAAACATTCTACCACAAGTAGTTTGTTAGCTGCAGTTATGAAGAGTGGAATTTTCTCGAACAATTCAATTACCAGTAGTATACCTAATTTAAGTTTCTTGGATACAAAGAACCTACCTTCGCAGTCAGGGGTTCAGCCTCCCCAGCCTGCTGGATCTTCTACCTCGCTAATTTCTTCGGGCCCTGGGGTTGCATCACCATCATCTTTAGGTCCTCCCAATTCATCTACTCTGCCAACTATATCTCAAGGAAAGGTTGGACAACCATCAAGGCCACCTCCACAACGACCAGCTTCCTCTATTGTGAGTAGTTCAGCTCAGACCACAAGTGTCACTAGCAGTACCTCAAAtccaatttcaaatattttaaactctttAGTTGCGAAGGGGTTGATATCTGCTAAAACAGGGTCCCCTACTGAGGTGCCAGCTGAGATACAGACACGATTGGAGGACCAAAGCCAGACCATTACTGCAAGTACCTCCTTGCCGGTTGCTTCTTTTCCTGGTCCTGTTGCCATCCCTGAATCATCTACAGGAGATGATGTAGATCATGATGCAAAAGACTCTGCAGCTATATCTCATTCAACTGCCACGGAAACACGAAATCTCATTGGCTTTGAGTTTAAGCCTGATGTGATCCGAGAATTGCATCCAGATGTAATCAGAGATCTACTTGAGGATCTTCCACATCATTGCAATGTGTGTGGCCTAAGGCTTAAACATCAAGAACAGTTTAACAGACACTTGGAGTGGCATGCCACTAGAGAAAGGGAACAAAATGGTCTGATTAAAGCATCAAGAGGATGGTATGCAAAATCTAGCGATTGGATTGGCTCCAGTGAGGCTGAAATCACATCTGAGTCTGAGCATACTAATTCTGTAGACATATATGCCAAGACAAAAGACGATGGTGAATTGGATGAGATGGTTCCAACAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGTGAGATTTTTGAAGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCTGCTTACATGACGATCTCAGATAGCAATGGCGAGATGGGTAGTGGTCCAATCATTCATGCGAAATGCTTATCAAGGAGCTCCATATTAGTTGCTAAAACGGAACAGGTTTG 3056 0.4427 MENSRRSFDRSREAGVKKPRLTDELERVPNSSIRQFPQRQGGSGVNTFASARFRTNDRDSESSDSGRGGYQPQQPLHQELVAQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGQDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWRGVFPPPTLQMIEKELGFTPAVNDSSSSTMKSNSPSQRPPHSIHVNPKYLERQRLQQSTRTKGVANDTTGVVANSTEDAERPDRALGGGRPWADPSVNIHNIQRSHRDAFNDSIPEKSSPASYVGNEYNSDLSRNLGLGIGRTGGRVSELGHEKAWYKAYGGGVAETIAGQRNGFSVKHGLLNHEGPKSMNLDANHQTTENLTSLKSNVMSSSWKNSEEEEFMWDGMNSGLTDRGASNIPSSLNKNHWTADNENLEVEDQLPIPRHFRAKEQQSIDELDRRPGHSEDYVSNLGDLPTNSLVRIGNRPFLPNATTGSAGIAGQLQFSVRAGSPSGQSPLRQQSPSPPVPMRHPPNPLRNMAEEDRSQTLKTSQFSGSLQSKHFRDPSPVPPPNVKVSNLRRSQQKDPRIPLSSGTSFPQRHHSAPLQQQELGSSDSGVSDKTEKQPQSEVTLAAETSKHSTTSSLLAAVMKSGIFSNNSITSSIPNLSFLDTKNLPSQSGVQPPQPAGSSTSLISSGPGVASPSSLGPPNSSTLPTISQGKVGQPSRPPPQRPASSIVSSSAQTTSVTSSTSNPISNILNSLVAKGLISAKTGSPTEVPAEIQTRLEDQSQTITASTSLPVASFPGPVAIPESSTGDDVDHDAKDSAAISHSTATETRNLIGFEFKPDVIRELHPDVIRDLLEDLPHHCNVCGLRLKHQEQFNRHLEWHATREREQNGLIKASRGWYAKSSDWIGSSEAEITSESEHTNSVDIYAKTKDDGELDEMVPTDENQCLCVLCGEIFEDVYCQERDEWMFKGAAYMTISDSNGEMGSGPIIHAKCLSRSSILVAKTEQV 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02468 1018 MobiDBLite consensus disorder prediction 455 479 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 678 728 - -
Bva04g02468 1018 SUPERFAMILY ENTH/VHS domain 78 203 IPR008942 -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 549 565 - -
Bva04g02468 1018 CDD CID_Pcf11 81 193 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 455 471 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 1 27 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 204 225 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 511 645 - -
Bva04g02468 1018 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Bva04g02468 1018 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 453 1010 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bva04g02468 1018 MobiDBLite consensus disorder prediction 28 53 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 523 537 - -
Bva04g02468 1018 Gene3D - 71 201 IPR008942 -
Bva04g02468 1018 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 453 1010 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 235 259 - -
Bva04g02468 1018 SMART 558neu5 79 201 IPR006569 -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 204 280 - -
Bva04g02468 1018 Pfam CID domain 85 194 IPR006569 -
Bva04g02468 1018 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 453 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 1 73 - -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 736 758 - -
Bva04g02468 1018 ProSitePatterns Zinc finger C2H2 type domain signature. 872 892 IPR013087 -
Bva04g02468 1018 MobiDBLite consensus disorder prediction 579 645 - -
Bva04g02468 1018 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 453 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bva04g02468 1018 MobiDBLite consensus disorder prediction 678 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02468 Bva-Chr4 22489766 22497060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02468 52 415 C2H2 Transcription Factor Family AT4G04885 39.071 4.79e-58 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02468 CID 2e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02468 K14400 - gmx:100788958 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02468 04 22489766 22497060 Bva13g02085 13 16520136 16527572 BWGD
Bva04g02468 04 22489766 22497060 Bva04g02468 04 22489766 22497060 ECH