Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02462 ATGTATTCCAGTTCCCATTCCGCAGGTAGCAGCAGCTCTGCAGCAACAGGGCGTCACCCAGTGTACCGTGGGGTGAGGCGCAGGAGTAGTGGCAAATGGGTTTCGGAAATCAGAGAGCCCAGGAAGCCAAACAGGATTTGGTTAGGCACATTCCCTACACCAGAAATGGCTGCTGTTGCCTATGATGTTGCTGCTCTTGCTCTTAAGGGTAAGGATGCTGAGCTTAACTTTCCCAACTCTGCTTCTTCTCTCCCTGttcctgcttcttcttctgccCGTGATATTCAGCTGGCTGCAGCTagtgctgctgctgctgctggtgCAGCCAGAGATGCTTTATCTGGGCGTCAGGGAAATAATGTAGCTGCAGGGAACGTTAACGAATCAGTGCCTTCAGAAGTTGCTGAGTTTGTGGATGAGGATTTGATCTTTGACATGCCAAATGTTCTAATGAATATGGCAGAGGGAATGCTTTTGAGCCCTCCTCCTTTGGACAACACTGCTGCCCCAGAAAACAATTCTGTGGATCCAAACCTTTGGAAATTTCCTTG 551 0.4537 MYSSSHSAGSSSSAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPNSASSLPVPASSSARDIQLAAASAAAAAGAARDALSGRQGNNVAAGNVNESVPSEVAEFVDEDLIFDMPNVLMNMAEGMLLSPPPLDNTAAPENNSVDPNLWKFP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02462 183 MobiDBLite consensus disorder prediction 1 35 - -
Bva04g02462 183 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Bva04g02462 183 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Bva04g02462 183 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Bva04g02462 183 MobiDBLite consensus disorder prediction 164 183 - -
Bva04g02462 183 MobiDBLite consensus disorder prediction 1 17 - -
Bva04g02462 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 4 183 - -
Bva04g02462 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02462 Bva-Chr4 22457584 22458997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02462 17 183 AP2-EREBP Transcription Factor Family AT2G36450 66.286 4.67e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva04g02462 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02462 - - tcc:18598164 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02462 04 22457584 22458997 Bva13g02092 13 16559487 16560338 BWGD
Bva13g02094 13 16568989 16569778 Bva04g02462 04 22457584 22458997 BWGD
Bva04g02462 04 22457584 22458997 Bva04g02462 04 22457584 22458997 ECH