Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02460 ATGAAACCCGAGAGAGAAGTAAATGGAATGGTGAAGCGAAGAGCTGGGAGAAAGAAGTTCCATGAGACTCGGCACCCAATCTATAGAGGCGTAAGGGAAAGGAAGGGAAAATGGGTTTGCGAGCTACGGCAACCAAACAAGAAAACTCGTGTTTGGCTTGGCACTTTCGCTAACCCGGACATGGCAGCTGTAGCTTATGATGTTGCTGCTTTGGCTTTTAAAGGTGATTCTGCTTCGTTGAACTTCCCAAATGCAGCAAGCTCTTTGCCGCGCCTCGATTCGCGCACGTCTTCCGTCAGAGCCATTCAATTTGCTGCCATGGAAGCAGCTGAGAAGTACTTCTCTGCTTGTGTATCTGATTCGTCTTCTAATTTGGAGTATGATAGTTTTGGCTGCATGGATATGGAGAGCAGAATCTTAGAGGTGGATTTGGAAGCAGAAGATTCAGGTAGTGGGTTCTTTTGGGATGAAGAGGAGACGTTTAACATGCCGGTACTCATCAACAGCTTGGCAGAAGGCTTGATTATTACGCCACCTGCGTTGCAGAAAGGTTTCAATTGGGTTGAAATGGAAACTGCTGTCGACTTGACTCTCTGGGAATG 602 0.4701 MKPEREVNGMVKRRAGRKKFHETRHPIYRGVRERKGKWVCELRQPNKKTRVWLGTFANPDMAAVAYDVAALAFKGDSASLNFPNAASSLPRLDSRTSSVRAIQFAAMEAAEKYFSACVSDSSSNLEYDSFGCMDMESRILEVDLEAEDSGSGFFWDEEETFNMPVLINSLAEGLIITPPALQKGFNWVEMETAVDLTLWE 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02460 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 200 - -
Bva04g02460 200 SMART rav1_2 27 89 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 16 200 - -
Bva04g02460 200 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Bva04g02460 200 ProSiteProfiles AP2/ERF domain profile. 27 83 IPR001471 GO:0003700|GO:0006355
Bva04g02460 200 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02460 Bva-Chr4 22448221 22448963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02460 12 199 AP2-EREBP Transcription Factor Family AT4G25470 47.090 2.97e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g02460 AP2 9.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02460 - - aprc:113870892 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02460 04 22448221 22448963 Bva04g02460 04 22448221 22448963 ECH