Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02420 ATGGAGAACTTCGAAGGGAATCTTGAACTGAGGGAGGTTCAGAGACTCGAAGGTCACACAGATAGGGTCTGGAGCCTGGCTTGGAATCCTGCTACTGGACATACTGGAATTCcactttcttttgcttcttgtaGCGGCGACAAAACCGTCCGAGTCTGGGAGCAGAATCTGTCCTCTGGTCTTTGGAACTGCACGTTTTGGAAGAAACACAGAACAGTTCGATCCTGTGCTTGGTCACCATCAGGGAAACTGTTGGCTACTGCAAGCTTTGATGCCACAACTGCCATATGGGAAAATGTTGGGGGTGATTTCGAGTGTGTCTCTACTTTGGAGGGTCATGAAAATGAAGTTAAGGGTGTATCTTGGAATGCATCCGGATATTTGCTTGCAACTTGTGGTAGAAATAAATCTGTTTGGATATGGGAAGTGCAGCCAGGTAACGAGTTTGAGTGTGTCTCAATGCTGCAAGGACATACACATGATGTAAAAATGGTGCAGTGGCATCCAACAATggacattttattttcatgttgcTATGATAACAATGTTAAGGTTTGGGCAGACGAAGATGACAGTGATGATTGGCAGTGTATTCAAACTTTAGGAGAGCCTAATAAGTACTATTCCTTTACCTCTCCCGGCACTGTAACATTCCACAgcttctttgatttcttttcttcgaGTTCGACTCCTCTTTGCATATCAACGGTCATACTTCCACTGTTTGGGCCCTCTCCTTCAATGCTAGAGGGGACAAAATGGTTACCTGTAGGCATGAAGGATGCATCATTTGATGGTGGCATATTACGATTTCCTTTTCTGCacgataaattttttttttggatctCTGGAGACATCTTTGCTCTCTCACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGTGACAGAACCACCGtgtcttattttcttaattactgAAAGTAAGGATGAAGAGACGGAGAGACTCATGAACTATAGAGAAGGTATCATTGCCAGCGGAGCTGCTGATGATGGTATACGACTGTTTGTACAGAATAATGAGGTGTTGGTAAATGGTCCTCTATATAAATTGCTGctgaagaaggagaagacCCATGACATGGATGTAAATTCAGTGCAATGGAGCCCTGGGGAGAAACGGCTATTAGTCTCAGCAAGTGATGATGGGACCATCAAGGTTGGGGAGCTGGTATCACCATCACAGTGCTA 1220 0.4057 MENFEGNLELREVQRLEGHTDRVWSLAWNPATGHTGIPLSFASCSGDKTVRVWEQNLSSGLWNCTFWKKHRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKGVSWNASGYLLATCGRNKSVWIWEVQPGNEFECVSMLQGHTHDVKMVQWHPTMDILFSCCYDNNVKVWADEDDSDDWQCIQTLGEPNKYYSFTSPGTVTFHSFFDFFSSSSTPLCISTVILPLFGPSPSMLEGTKWLPVGMKDASFDGGILRFPFLHDKFFFWISGDIFALSQGIMIGQFSQFIGQVTEPPCLIFLITESKDEETERLMNYREGIIASGAADDGIRLFVQNNEVLVNGPLYKLLLKKEKTHDMDVNSVQWSPGEKRLLVSASDDGTIKVGELVSPSQC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02420 406 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Bva04g02420 406 Pfam WD domain, G-beta repeat 367 397 IPR001680 GO:0005515
Bva04g02420 406 Pfam WD domain, G-beta repeat 105 141 IPR001680 GO:0005515
Bva04g02420 406 Pfam WD domain, G-beta repeat 13 53 IPR001680 GO:0005515
Bva04g02420 406 Pfam WD domain, G-beta repeat 69 97 IPR001680 GO:0005515
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 406 - -
Bva04g02420 406 PANTHER WD40 PROTEIN CIAO1 330 400 IPR028608 GO:0016226|GO:0097361
Bva04g02420 406 PANTHER WD40 PROTEIN CIAO1 6 211 IPR028608 GO:0016226|GO:0097361
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Bva04g02420 406 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 330 400 - -
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 144 - -
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 98 IPR001680 GO:0005515
Bva04g02420 406 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 402 IPR028608 GO:0016226|GO:0097361
Bva04g02420 406 SMART WD40_4 61 98 IPR001680 GO:0005515
Bva04g02420 406 SMART WD40_4 9 54 IPR001680 GO:0005515
Bva04g02420 406 SMART WD40_4 360 399 IPR001680 GO:0005515
Bva04g02420 406 SMART WD40_4 103 142 IPR001680 GO:0005515
Bva04g02420 406 SMART WD40_4 148 187 IPR001680 GO:0005515
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 186 IPR001680 GO:0005515
Bva04g02420 406 Gene3D - 40 207 IPR015943 GO:0005515
Bva04g02420 406 Gene3D - 313 406 IPR015943 GO:0005515
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Bva04g02420 406 SUPERFAMILY WD40 repeat-like 9 397 IPR036322 GO:0005515
Bva04g02420 406 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 6 211 - -
Bva04g02420 406 CDD WD40 12 201 - -
Bva04g02420 406 ProSitePatterns Trp-Asp (WD) repeats signature. 129 143 IPR019775 -
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 186 - -
Bva04g02420 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 406 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02420 Bva-Chr4 22248276 22252713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02420 81 219 U-box Gene Family AT2G33340 27.338 4.82e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02420 K24730 - thj:104816391 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02420 04 22248276 22252713 Bva04g02420 04 22248276 22252713 ECH