Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02418 ATGAGTAAGCTACAAAGTGATGCACTCAGAGAGGCCATCTCCCAGGTTGTTACTAATTCAAAGGAGAAGAAACGTAACTTTACTGAGACCATTGAGCTGCAAATTGGATTGAAGAATTATGATCCACAGAAAGACAAGCGTTTCAGTGGCTCTGTTAGGCTTCCTCATATTCCTCGCCCTAAGATGAAGATTTGCATGCTTGGTGATGCTCAGCATGTAGAAGAGGCAGAAAAAATAGGGCTGGACAATATGGATGTGGAAGCGCtgaaaaaacttaataaaaacaagaaacttgTCAAGAAGCTGGCTAAGAAGTATCATGCTTTTCTAGCATCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGACCTGGCTTAAACAAGGCAGGTAAATTTCCGACATTAGTGACTCATCAGGAATCCTTGGAGTCAAAAGTTAATGAAACAAAAGCTATGGTAAAGTTTCAACTTAAGAAGGTTCTTTGTATGGGTGTTGCTGTTGGAAACTGCACGATGGAGGAGAAGCAGATATTCCAGAATGTACAACTCAGtgtcaattttcttgtttcattaTTGAAGAAGAATTGGCAAAATgTGAGGTGCTTATACCTGAAAAGTACCATGGGGAGTGCAATCCGCGTATACTA 650 0.3846 MSKLQSDALREAISQVVTNSKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVRLPHIPRPKMKICMLGDAQHVEEAEKIGLDNMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02418 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Bva04g02418 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Bva04g02418 216 Pfam Ribosomal protein L1p/L10e family 21 210 IPR028364 -
Bva04g02418 216 CDD Ribosomal_L1 9 215 IPR028364 -
Bva04g02418 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Bva04g02418 216 Gene3D - 19 210 - -
Bva04g02418 216 Gene3D - 65 154 IPR016095 -
Bva04g02418 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Bva04g02418 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02418 Bva-Chr4 22241681 22244814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02418 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 87.963 1.24e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02418 K02865 - gmx:100527763 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02418 04 22241681 22244814 Bva04g02418 04 22241681 22244814 ECH