Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva04g02408 | ATGCATAAAATGCCGGGGACAAGGGAGAGTGATGGAGTTGCCTGTAATCCTGAGTCACCTGAGAATGGTTCTGAAAATCCTACTAATTCCGAGGAGCAAGTAGACCTTGATGATGACAATGATCAAGAGGAGACAATGGAGGAAGAGATTGAGTATGAAGAAGTagaagaggaggaggaggaagaagaagaagaggaagaggaagaggaagaggaggaggaggaggaggaggttGTAGATGAAGAGGAGGAAGATAAAGGGGCTGCCAATGGAAATGATGAAGAGATGAAAGTTGCTGATACTGAggatgaaaatgagaaaaagaagcacGCAGAGCTTCTTGCTCTTCCACCTCACGGGTCAGAGGTTTATCTTGGTGGCATTCCTCACAATATTTCTGAAGAGGAGTTGAAGTGTTTTTGTGAATCTGTGGGAGAAATCTCAGAGGTTAGGATTATGAAAGGGAAAGAATCAGGTGAAGGAAAAGGTTATGCTTTTGTGACCTTCAGGACGAAGGAGCTGGCTTCTAAGGCCATTGAGAAGCTAAATAATTCTGAAATTAAGgggagaaaaataaagtgctCAACATCTCAAGCAAAGAATAAGTTGTTCATTGGTAATGTTCCAAGGAATTGGACACCGGAAGATATGAGAAAGGCTGTAACAAAGATTGGGCCTGGAGTAATTTCTGTGGAATTACTGAAgGACCCACAGAATTCCAGCCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAGacccaaaatttaaacttgacAACAATGCTCCTACAGTGAGCTGGGCTGACCCTAAGAATTCCGAATCATCTGCTGCCTCCCAGGTCAAGGCAGTATATGTCAAGAATCTACCAGAAGACATTACTCAGGATCGTCTTAGGGAACTGTTTGAACATCATGGGAAGATTACAAGAGTGGTTCTTCCTCCTGCAAAAGCAGGACAGGAGAAGAGCAGATTTGGTTTTATTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCCTTGAAGAATACTGAGAAGTATGAAATTGACGGCCAAATTTTGGAGTGTTCACTTGCAAAGCCCCAAGCAGATCATAAGTCATCTGGGCTGCCAAATTCACAGAAGCCTGTTGTACTTCCAACTTACCCTCCTCGCCTTGGTTATGGTTTGGTAGGGGGCACCTATGGTGCTATGGGTGCAGGATATGGCGCCGCAGGCTTCACACAACCAATGATGTATGGTGGGGGAGCTACCCCTGCTGGTATGGCAATGATGCCAATGCTTTTACCAGATGGAAGAATTGGATATGTATTGCAACAACCTGGGGTGCAACCTTATGCTCCTCAACCAGCACCCGGGGGTGGTAGGAATAGTGGTGGTAGATCAAGCGGTGGGAAACGTGCTAATGTTAATAACCGTGGACGTGGCCGGTATAATCCTTACTG | 1481 | 0.4078 | MHKMPGTRESDGVACNPESPENGSENPTNSEEQVDLDDDNDQEETMEEEIEYEEVEEEEEEEEEEEEEEEEEEEEEEVVDEEEEDKGAANGNDEEMKVADTEDENEKKKHAELLALPPHGSEVYLGGIPHNISEEELKCFCESVGEISEVRIMKGKESGEGKGYAFVTFRTKELASKAIEKLNNSEIKGRKIKCSTSQAKNKLFIGNVPRNWTPEDMRKAVTKIGPGVISVELLKDPQNSSRNRGFAFIEYYNHACAEYSRQKMSDPKFKLDNNAPTVSWADPKNSESSAASQVKAVYVKNLPEDITQDRLRELFEHHGKITRVVLPPAKAGQEKSRFGFIHFAERSSAMKALKNTEKYEIDGQILECSLAKPQADHKSSGLPNSQKPVVLPTYPPRLGYGLVGGTYGAMGAGYGAAGFTQPMMYGGGATPAGMAMMPMLLPDGRIGYVLQQPGVQPYAPQPAPGGGRNSGGRSSGGKRANVNNRGRGRYNPY | 493 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva04g02408 | 493 | Gene3D | - | 16 | 201 | IPR012677 | - | |
Bva04g02408 | 493 | MobiDBLite | consensus disorder prediction | 90 | 107 | - | - | |
Bva04g02408 | 493 | MobiDBLite | consensus disorder prediction | 31 | 89 | - | - | |
Bva04g02408 | 493 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Bva04g02408 | 493 | Gene3D | - | 202 | 282 | IPR012677 | - | |
Bva04g02408 | 493 | MobiDBLite | consensus disorder prediction | 454 | 493 | - | - | |
Bva04g02408 | 493 | Coils | Coil | 43 | 85 | - | - | |
Bva04g02408 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 373 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 118 | 373 | IPR035979 | GO:0003676 | |
Bva04g02408 | 493 | SMART | rrm2_1 | 122 | 195 | IPR003954 | GO:0003676 | |
Bva04g02408 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 297 | 364 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 266 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 193 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | SMART | rrm1_1 | 202 | 279 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | SMART | rrm1_1 | 296 | 369 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | SMART | rrm1_1 | 122 | 195 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | PANTHER | - | 19 | 491 | - | - | |
Bva04g02408 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 199 | IPR000504 | GO:0003723 | |
Bva04g02408 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 202 | 287 | IPR035979 | GO:0003676 | |
Bva04g02408 | 493 | Gene3D | - | 283 | 416 | IPR012677 | - | |
Bva04g02408 | 493 | PANTHER | GEO13361P1-RELATED | 19 | 491 | - | - | |
Bva04g02408 | 493 | CDD | RRM_SF | 123 | 195 | - | - | |
Bva04g02408 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 283 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva04g02408 | Bva-Chr4 | 22198010 | 22203297 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva04g02408 | 123 | 448 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 23.097 | 2.17e-13 | 70.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva04g02408 | K13161 | - | pvy:116104942 | 621.698 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva04g02408 | 04 | 22198010 | 22203297 | Bva04g02408 | 04 | 22198010 | 22203297 | ECH |