Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02408 ATGCATAAAATGCCGGGGACAAGGGAGAGTGATGGAGTTGCCTGTAATCCTGAGTCACCTGAGAATGGTTCTGAAAATCCTACTAATTCCGAGGAGCAAGTAGACCTTGATGATGACAATGATCAAGAGGAGACAATGGAGGAAGAGATTGAGTATGAAGAAGTagaagaggaggaggaggaagaagaagaagaggaagaggaagaggaagaggaggaggaggaggaggaggttGTAGATGAAGAGGAGGAAGATAAAGGGGCTGCCAATGGAAATGATGAAGAGATGAAAGTTGCTGATACTGAggatgaaaatgagaaaaagaagcacGCAGAGCTTCTTGCTCTTCCACCTCACGGGTCAGAGGTTTATCTTGGTGGCATTCCTCACAATATTTCTGAAGAGGAGTTGAAGTGTTTTTGTGAATCTGTGGGAGAAATCTCAGAGGTTAGGATTATGAAAGGGAAAGAATCAGGTGAAGGAAAAGGTTATGCTTTTGTGACCTTCAGGACGAAGGAGCTGGCTTCTAAGGCCATTGAGAAGCTAAATAATTCTGAAATTAAGgggagaaaaataaagtgctCAACATCTCAAGCAAAGAATAAGTTGTTCATTGGTAATGTTCCAAGGAATTGGACACCGGAAGATATGAGAAAGGCTGTAACAAAGATTGGGCCTGGAGTAATTTCTGTGGAATTACTGAAgGACCCACAGAATTCCAGCCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAGacccaaaatttaaacttgacAACAATGCTCCTACAGTGAGCTGGGCTGACCCTAAGAATTCCGAATCATCTGCTGCCTCCCAGGTCAAGGCAGTATATGTCAAGAATCTACCAGAAGACATTACTCAGGATCGTCTTAGGGAACTGTTTGAACATCATGGGAAGATTACAAGAGTGGTTCTTCCTCCTGCAAAAGCAGGACAGGAGAAGAGCAGATTTGGTTTTATTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCCTTGAAGAATACTGAGAAGTATGAAATTGACGGCCAAATTTTGGAGTGTTCACTTGCAAAGCCCCAAGCAGATCATAAGTCATCTGGGCTGCCAAATTCACAGAAGCCTGTTGTACTTCCAACTTACCCTCCTCGCCTTGGTTATGGTTTGGTAGGGGGCACCTATGGTGCTATGGGTGCAGGATATGGCGCCGCAGGCTTCACACAACCAATGATGTATGGTGGGGGAGCTACCCCTGCTGGTATGGCAATGATGCCAATGCTTTTACCAGATGGAAGAATTGGATATGTATTGCAACAACCTGGGGTGCAACCTTATGCTCCTCAACCAGCACCCGGGGGTGGTAGGAATAGTGGTGGTAGATCAAGCGGTGGGAAACGTGCTAATGTTAATAACCGTGGACGTGGCCGGTATAATCCTTACTG 1481 0.4078 MHKMPGTRESDGVACNPESPENGSENPTNSEEQVDLDDDNDQEETMEEEIEYEEVEEEEEEEEEEEEEEEEEEEEEEVVDEEEEDKGAANGNDEEMKVADTEDENEKKKHAELLALPPHGSEVYLGGIPHNISEEELKCFCESVGEISEVRIMKGKESGEGKGYAFVTFRTKELASKAIEKLNNSEIKGRKIKCSTSQAKNKLFIGNVPRNWTPEDMRKAVTKIGPGVISVELLKDPQNSSRNRGFAFIEYYNHACAEYSRQKMSDPKFKLDNNAPTVSWADPKNSESSAASQVKAVYVKNLPEDITQDRLRELFEHHGKITRVVLPPAKAGQEKSRFGFIHFAERSSAMKALKNTEKYEIDGQILECSLAKPQADHKSSGLPNSQKPVVLPTYPPRLGYGLVGGTYGAMGAGYGAAGFTQPMMYGGGATPAGMAMMPMLLPDGRIGYVLQQPGVQPYAPQPAPGGGRNSGGRSSGGKRANVNNRGRGRYNPY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02408 493 Gene3D - 16 201 IPR012677 -
Bva04g02408 493 MobiDBLite consensus disorder prediction 90 107 - -
Bva04g02408 493 MobiDBLite consensus disorder prediction 31 89 - -
Bva04g02408 493 MobiDBLite consensus disorder prediction 1 107 - -
Bva04g02408 493 Gene3D - 202 282 IPR012677 -
Bva04g02408 493 MobiDBLite consensus disorder prediction 454 493 - -
Bva04g02408 493 Coils Coil 43 85 - -
Bva04g02408 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Bva04g02408 493 SUPERFAMILY RNA-binding domain, RBD 118 373 IPR035979 GO:0003676
Bva04g02408 493 SMART rrm2_1 122 195 IPR003954 GO:0003676
Bva04g02408 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Bva04g02408 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 266 IPR000504 GO:0003723
Bva04g02408 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Bva04g02408 493 SMART rrm1_1 202 279 IPR000504 GO:0003723
Bva04g02408 493 SMART rrm1_1 296 369 IPR000504 GO:0003723
Bva04g02408 493 SMART rrm1_1 122 195 IPR000504 GO:0003723
Bva04g02408 493 PANTHER - 19 491 - -
Bva04g02408 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Bva04g02408 493 SUPERFAMILY RNA-binding domain, RBD 202 287 IPR035979 GO:0003676
Bva04g02408 493 Gene3D - 283 416 IPR012677 -
Bva04g02408 493 PANTHER GEO13361P1-RELATED 19 491 - -
Bva04g02408 493 CDD RRM_SF 123 195 - -
Bva04g02408 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 283 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02408 Bva-Chr4 22198010 22203297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02408 123 448 Eukaryotic Initiation Factors Gene Family AT1G71770 23.097 2.17e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02408 K13161 - pvy:116104942 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02408 04 22198010 22203297 Bva04g02408 04 22198010 22203297 ECH