LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g02400	ATGGCTTCTTGGGATCAAGCAGAAATTGGAGTTCCTTCTCTCGTAACCTCGTCGCTTCTTTCTCCATTTCCTCTCCTTCTTCGAGTACCTATGTCCATAAATCAATCAGCTCCTTGCCAACAAGTGCACAACTCATTGATGTTcaagaaatttcatatttgtaagAGTTTCGTAGGGCTGAGGCAGGTAGAGAGGAGAGTAGCAAGGATGCAGATATTCGTCAAAACATTAACTGGGAAGACCATAACTCTAGAGGTCGAGAGCAGCGACACTATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCGGATCAGCAGCGTTTGATATTCGCTGGCAAGCAGCTCGAAGATGGCCGAACCTTGGCTGattataatattcaaaagGAGTCTACGCTTCATCTTGTGCTGAGACTTCGTGGAGGCATCATAGAGCCTTCATTGATGGCTTTAGCTCGCAAGTACAATCAAGACAAGATGATCTGCCGCAAGTGTTATGCTCGTCTACACCCAAGGGCTGTAAACTGCCGGAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTA	593	0.4384	MASWDQAEIGVPSLVTSSLLSPFPLLLRVPMSINQSAPCQQVHNSLMFKKFHICKSFVGLRQVERRVARMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g02400	197	SUPERFAMILY	Ubiquitin-like	69	145	IPR029071	-
	Bva04g02400	197	SUPERFAMILY	Zn-binding ribosomal proteins	145	196	IPR011332	GO:0006412
	Bva04g02400	197	PRINTS	Ubiquitin signature	80	100	IPR019956	-
	Bva04g02400	197	PRINTS	Ubiquitin signature	122	143	IPR019956	-
	Bva04g02400	197	PRINTS	Ubiquitin signature	101	121	IPR019956	-
	Bva04g02400	197	ProSiteProfiles	Ubiquitin domain profile.	70	145	IPR000626	GO:0005515
	Bva04g02400	197	SMART	ubq_7	70	141	IPR000626	GO:0005515
	Bva04g02400	197	SMART	Ribosomal_L40e_3	146	197	IPR001975	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02400	197	PANTHER	UBIQUITIN-60S RIBOSOMAL PROTEIN L40	70	194	-	-
	Bva04g02400	197	Pfam	Ribosomal L40e family	147	196	IPR001975	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02400	197	PANTHER	UBIQUITIN	70	194	-	-
	Bva04g02400	197	CDD	Ubl_ubiquitin	70	145	-	-
	Bva04g02400	197	Gene3D	-	149	197	IPR038587	-
	Bva04g02400	197	Gene3D	-	65	148	-	-
	Bva04g02400	197	Pfam	Ubiquitin family	72	143	IPR000626	GO:0005515
	Bva04g02400	197	ProSitePatterns	Ubiquitin domain signature.	96	121	IPR019954	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g02400	Bva-Chr4	22158246	22160517	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g02400	70	197	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	99.219	5.67e-92	263

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva04g02400	04	22158246	22160517	Bva04g02400	04	22158246	22160517	ECH