Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02382 ATGGAACcaatccaaaaccaaaactcACACTCTTCTGGATCACCCGTTCAACTCTACCACCAGTACCAACAAACCAGCTCCAGCTGTCTCAATTCTCACTCTACTAATTCCCGTTTCAACCTTAATCACGACGACGATGAAGATGACGACAACGTAGTACAAGCAGTTGCCGTTAATGTTGTTGACCAACCCAGCTCCCAAGACGAAAAGGAACCCATGTTTGAGAAGCCATTGACGCCCAGCGACGTTGGCAAGCTGAACCGCCTCGTCATCCCCAAACAGCACGCCGAGAAGTACTTCCCACTCGGTGACTCAGGCGAGAGCAGGGGGTTGCTACTGAGTTTCGAGGACGAGTCCGGCAAGAGCTGGCGATTCCGCTATTCCTATTGGAATAGTAGCCAAAGCTATGTTTTAACCAAAGGCTGGAGCCGTTACGTGAAGGAGAAGCGTCTAGATGCGGGCGACGTCGTGTTGTTCGAGCGCCACCGCGTCGATTCACAGCGCCATTTTATCAATTGGAGACGCCGCCAGCAAAGTGCTACTGCGCCGGCGCAAGTTAGCCGAGCGGTGAGCGGGGATAGCAACAATGGCGTGGGTGTGGGGTGGACCAGACACTTTTATGCTGCGCAGCCTTATCCTACGCATCATCAGCCTTTGACATACCAACCTGAATGTCTTCATGCAGATAGAGCGTCCCAAAGCCAAGTTGATGAGTGCCAAACGACGTCGCCGGTGGGAAACAGCTCCAGGGTTCTGAGGCTGTTCGGGGTGAATATGGAATGCCAAGAGCCCGATGAATCTGTATCCGGATCCTCAAGATCCGAATATTCGTACCTGTCATCAACCCAGACCCAGGGACAGGGTACACCTACACCTACACCTACACCTACCCACCAATATTTCTACCATCAGCAAGCTTCTTATTCCCCCAACCCTCACATTCACACGATATATGAACTACCATTTTGCTA 971 0.5098 MEPIQNQNSHSSGSPVQLYHQYQQTSSSCLNSHSTNSRFNLNHDDDEDDDNVVQAVAVNVVDQPSSQDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGDSGESRGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRVDSQRHFINWRRRQQSATAPAQVSRAVSGDSNNGVGVGWTRHFYAAQPYPTHHQPLTYQPECLHADRASQSQVDECQTTSPVGNSSRVLRLFGVNMECQEPDESVSGSSRSEYSYLSSTQTQGQGTPTPTPTPTHQYFYHQQASYSPNPHIHTIYELPFC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02382 323 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 21 274 - -
Bva04g02382 323 SUPERFAMILY DNA-binding pseudobarrel domain 69 178 IPR015300 -
Bva04g02382 323 ProSiteProfiles B3 DNA-binding domain profile. 74 177 IPR003340 GO:0003677
Bva04g02382 323 Gene3D - 62 187 IPR015300 -
Bva04g02382 323 SMART B3_2 74 177 IPR003340 GO:0003677
Bva04g02382 323 MobiDBLite consensus disorder prediction 1 48 - -
Bva04g02382 323 MobiDBLite consensus disorder prediction 1 38 - -
Bva04g02382 323 MobiDBLite consensus disorder prediction 263 297 - -
Bva04g02382 323 MobiDBLite consensus disorder prediction 264 297 - -
Bva04g02382 323 CDD B3_DNA 72 170 IPR003340 GO:0003677
Bva04g02382 323 Pfam B3 DNA binding domain 74 176 IPR003340 GO:0003677
Bva04g02382 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 274 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02382 Bva-Chr4 22064771 22065987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02382 68 275 RAV Transcription Factor Family AT5G06250 53.540 3.74e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva04g02382 B3 6.8e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02382 - - aprc:113872948 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02382 04 22064771 22065987 Bva13g02175 13 16970225 16974132 BWGD
Bva04g02382 04 22064771 22065987 Bva04g02382 04 22064771 22065987 ECH