Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02366 ATGTCCGGCGGCGCAGGAGCTTCGAACCGCCAGGCGTCTCCACCGCCGGAACAGCCCACCCTCCAGAAACGGCCGCCACTGAAGCGTAACCTTGCGTTTGCATTGACGAAGCCGGCATTTGTTCCTCCTGACGACTATCACAGCTTTTCTGCTGCTGACTCTAGGAGAGCTGCCGATCATGAAGCTGAAGTTATTATTGTTAGATCTCCTTACATGAAGAGGAAGGGTGGAGTGAATGACAACGAAGGTGAATCACAGGAGTGGAGTAACACCCCTGGATTTCCGAATGTACCAAATAGTCCTTTCAGAACACCTGTGTCTGGAAAACGGGGAAGGACatacaataaaacaaaggTTTCTAAGGAGGGCAAATCTGGTCCTCAGACACCTATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTGGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGCTCAAGTATGCGGAGGATGGTAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATACGACATTACAAATGTCTTGGAAGGCATTGGTCTCATTGAGAAAAAGCTCAAGAATAGAATACACTGGAAGGGACTTGATTCTTCAACTTCTGGAGAGTTGGATGGTGATGTCTCTATGCTAAAGGCTGAAGTTGAGAAACTCTCCTTGGAAGAGTGCAGATTAGATGATCAAATAAGGGAGATGCAGGAAAGGCTGAGGAGTTTGAGTGAAGACGAAAGCAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATTAAGGGCATACCCTGCTTCAAGAATGAAACGCTTATAGCAATTAAAGTCCCACATGGAACCACCCTGGAGGTCCCTGAACCTGAGGAAGCTGTTGATTATCCACAGAGGAGATATAGAATAATTCTTAGAAGCACAATGGGTCCCATTGATGTGTACCTCGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAACAGTGTTGAACCATCAATTAGCTTCCCACTGCTATCAAGTTCAGGGTCTAATGAACACCTAACAACAGAAATGCTTCCTGTTGAATACAATGGAAATGGAACTGATACTCAAGCTCAACTACCTTCTTATACACGCTCTGATCTAACTGCTTCACAAGAGTATGCTGGGGGGATGATGAAGATTGTTCCTTCAGATGTTGATATTGATGCTGATTATTGGCTTTTATCAGACGCTGACATCAGCATTACAGATATGTGGAAAGCGGATTCTAGTGTTGATTGGAATGAGGCGGATATGCTTCATCCTGACTTCGGCATAATCTCAAGGCCACAAACTCCATCTGGGTTTTCTGAAGCGCCATCTTCCGTAGCTAACTCTACTCAgGGAAACTGCTTCAACATAATTGATAGTCTCGTGAGTGTCGGTGATGCTGTCAGAAGCTGTTG 1460 0.4432 MSGGAGASNRQASPPPEQPTLQKRPPLKRNLAFALTKPAFVPPDDYHSFSAADSRRAADHEAEVIIVRSPYMKRKGGVNDNEGESQEWSNTPGFPNVPNSPFRTPVSGKRGRTYNKTKVSKEGKSGPQTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLLKYAEDGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGLDSSTSGELDGDVSMLKAEVEKLSLEECRLDDQIREMQERLRSLSEDESNQKWLFVTEEDIKGIPCFKNETLIAIKVPHGTTLEVPEPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNSVEPSISFPLLSSSGSNEHLTTEMLPVEYNGNGTDTQAQLPSYTRSDLTASQEYAGGMMKIVPSDVDIDADYWLLSDADISITDMWKADSSVDWNEADMLHPDFGIISRPQTPSGFSEAPSSVANSTQGNCFNIIDSLVSVGDAVRSC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02366 486 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Bva04g02366 486 Gene3D - 219 329 - -
Bva04g02366 486 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Bva04g02366 486 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Bva04g02366 486 Gene3D - 141 214 IPR036388 -
Bva04g02366 486 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Bva04g02366 486 CDD E2F_DD 228 329 IPR032198 GO:0046983
Bva04g02366 486 MobiDBLite consensus disorder prediction 120 142 - -
Bva04g02366 486 MobiDBLite consensus disorder prediction 82 103 - -
Bva04g02366 486 PANTHER TRANSCRIPTION FACTOR E2F 25 447 IPR015633 GO:0000978|GO:0006357
Bva04g02366 486 MobiDBLite consensus disorder prediction 1 58 - -
Bva04g02366 486 PANTHER TRANSCRIPTION FACTOR E2FB 25 447 - -
Bva04g02366 486 MobiDBLite consensus disorder prediction 1 17 - -
Bva04g02366 486 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Bva04g02366 486 MobiDBLite consensus disorder prediction 74 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02366 Bva-Chr4 21984032 21989356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02366 25 465 E2F-DP Transcription Factor Family AT2G36010 56.616 1.32e-161 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva04g02366 E2F_CC-MB 4.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02366 K06620 - gmx:100811762 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02366 04 21984032 21989356 Bva04g02366 04 21984032 21989356 ECH