Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02342 ATGGCGACGTACTTTCATGGCAATTCAGAAATCCAAGCACCCGATGGGCTCCAAACACTTGTCCTAATGAACCCCGGGTACATTCAGTACTCGGACACTGCTCCTCCGGCGCCGGCACCGCACGCCAGCAACCTTGTCTTCCTCAATTCTGCTGCCGCTATTGCTGCCAACAACTCGCTCAATCCCCAAAGCCTCCCGCACGCGCCACCGAGTCACACCCAGCAATTCGTGGGCATCCCTCTCCCCACCGCCTCCTCCCAGGACCCTAACCACCAACCCATGCATGGCCACCACGACGTGTCCGCCTTGCATGGATTCGTGCCTCGCATGCAGTACAATCTCTGGAACACAATTGACCAAAACGCGACGGCGCGTGATACCCCACGCGCACAGCAGGGATTGTCTCTCAGCCTTTCCTCGCAGCAAGCAGGGTTGGGGTCGTTCCGGGTCGATCGCGACGCTGCATCGCAGGCTCAAGCGCCAGCTATTTCTGGAGAAGATGTACGGGTGTCGGGTGGGTCACCTTCCTCGGCTTCCGGGGTTACCAATGGAGTCTCAGGGATTCAGAGCGTGCTTCTGAGCTCCAAGTACTTGAAAGCAGCACAAGAACTCCTAGACGAGGTCGTCAACGTCAACAATGGGATTAAGACTGATTTGGCAAAGAAGGGTAGTAGACAGAGCAAGGCTATTGGAGAGTCTTCCACCGCCGCAAGTGGAGACGGTTCAAAGGGTGAAGAGGCAAGTGGGAAACCTACCTCTGAGCTTTCAACTGCTGAGAGACAGGAAATTCAGATGAAGAAAGCAAAGCTAATCAGCATGCTCGACGAGGTGGAACAAAGGTACAGGCAGTACCATCACCAGATGCAGATTGTAATTTCCTCATTTGAACAAGCCGCGGGGATTGGCTCGGCGAGAACGTACACGGCACTTGCACTACAAACGATTTCCAAGCAGTTTCGGTGTTTGAAAGATGCGATTACAGGCCAAATTCGAGCTGCAAATAAGAGCTTGGGAGAAGAAGATTGTATTGGAGGAAAAATTGAAGGGTCAAGACTCAAGTACGTAGACCACCATCTGCGACAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCCTGGAGACCCCAGAGAGGATTGCCAGAAAGATCGGTTTCTGTTCTTCGTGCTTGGCTTTTCGAGCACTTCCTCCACCCTTACCCCAAGGATTCAGACAAACACATGCTTGCCAAGCAAACAGGGCTTACGAGGAGCCAGGTTTCTAATTGGTTCATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAAGAGATGTACTTGGAGGAGATGAAGGAGCAAGAACAGAATGGGTCAGAGGAAAAATCAAGCAAGAGCAATGAAGATCCTACAACAAAATCTGCAGCCTCACAAGAGAAAGGTACTGGCACTGACACTGAAGCTAGAAGTTTCAATTCCAAGCAAGACGTTGGTGCGAACCAGAACACTCCTACAGTTTCAGTTTCTAAGCCATCAACTTCACCAGCTGGGGGAAATGTGAGGAACCGTTCAGGTTTCAGCTTCATTGGGTCATCAGAACTGGAAGGAATCACACAAGGAAGCCCCAAGAAACCAAGGAACCATGATGTTCTGCAATCCCCAAACAGTGTCCCTTCAATAAACATGGATGTCAAGCCAGATGAGGCAAACACTGAGCATCTTTCAATGAAATTTGGAGATGAGAGGCAGAGCAGAGATGGATACTCTTTCATGGGGAACCAAACAAACTTCATTGGAGGTTTTGGGCAATACCCAATTGGGGAAATTGGTAGGTTTGATGCAgagcaattcacaccaaggtTTTCAGGTAATGGAGTTTCCCTCACTCTTGGCCTTCCTTACTGTGACTCGTTATCAGGAACCCATCAAACATTTCTCCCAAATCAGAACATTCAATTGGGAAGGAGATTGGACATTAGTGAACCAAATGAGTTTGGTGCCATGAACACTTCCACTCCTCACTCATCAGCTGCATTTGAAAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCgtg 2087 0.4945 MATYFHGNSEIQAPDGLQTLVLMNPGYIQYSDTAPPAPAPHASNLVFLNSAAAIAANNSLNPQSLPHAPPSHTQQFVGIPLPTASSQDPNHQPMHGHHDVSALHGFVPRMQYNLWNTIDQNATARDTPRAQQGLSLSLSSQQAGLGSFRVDRDAASQAQAPAISGEDVRVSGGSPSSASGVTNGVSGIQSVLLSSKYLKAAQELLDEVVNVNNGIKTDLAKKGSRQSKAIGESSTAASGDGSKGEEASGKPTSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCIGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEQEQNGSEEKSSKSNEDPTTKSAASQEKGTGTDTEARSFNSKQDVGANQNTPTVSVSKPSTSPAGGNVRNRSGFSFIGSSELEGITQGSPKKPRNHDVLQSPNSVPSINMDVKPDEANTEHLSMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPYCDSLSGTHQTFLPNQNIQLGRRLDISEPNEFGAMNTSTPHSSAAFESINMQNPKRFAAQLLPDFVA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02342 695 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677|GO:0006355
Bva04g02342 695 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677
Bva04g02342 695 MobiDBLite consensus disorder prediction 464 533 - -
Bva04g02342 695 MobiDBLite consensus disorder prediction 152 183 - -
Bva04g02342 695 Pfam Associated with HOX 191 327 IPR006563 -
Bva04g02342 695 Gene3D - 379 459 - -
Bva04g02342 695 MobiDBLite consensus disorder prediction 540 555 - -
Bva04g02342 695 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 656 - -
Bva04g02342 695 SUPERFAMILY Homeodomain-like 377 442 IPR009057 -
Bva04g02342 695 SMART HOX_1 376 440 IPR001356 GO:0003677
Bva04g02342 695 MobiDBLite consensus disorder prediction 227 241 - -
Bva04g02342 695 SMART prehox3 186 328 IPR006563 -
Bva04g02342 695 Coils Coil 260 280 - -
Bva04g02342 695 MobiDBLite consensus disorder prediction 220 259 - -
Bva04g02342 695 MobiDBLite consensus disorder prediction 446 557 - -
Bva04g02342 695 MobiDBLite consensus disorder prediction 446 463 - -
Bva04g02342 695 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 656 - -
Bva04g02342 695 CDD homeodomain 376 437 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02342 Bva-Chr4 21862016 21866071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02342 1 695 Homeobox Transcription Factor Family AT2G35940 50.461 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva04g02342 POX 1.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02342 - - qsu:112031679 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02342 04 21862016 21866071 Bva04g02342 04 21862016 21866071 ECH