Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02340 aTGGATGAGATTGAAGTTCCTCAATACTTCATCTGCCCTATATCTCTCCAAATCATGAAAGATCCTGTGACTGCTTTAACAGGCATCACATATGATCGAGAGAGCATAGAACAATGGCTATTCAACAACGAGAATACCTCTTGTCCTGTCACCAAACAGCTTCTGCCAAAAGACTCAGACTTAACTCCTAATCACACACTGCGTCGCCTAATCCAAGCTTGGTGCACCCAGAATGCTTCACTTGGTGTTGAACGCATTCTTACCCCTAAACCACCGCTTGACAAGTTTCAAGTCATTAAGCTCCTTAAAGATTTCGGGAACCCTCAGTTGCAGCTCAAAACTATCAGACAATTGGAACTGCTCGCCGCggagaaagaaaggaataaGAAGTGTTTGATAGAAGCTGGCGTGCCTAAGGCCATGTTCATGTTCATTTTGAGTTGCTTCAGGAAAGGCCAAATCGATGAGGGTCTTGAAGAAGCTCTTAGTCTATTGCACTTTGTTATGGTCCCTGAAGAGGAAGTAAAATTGCTTCTCGCCAAAAATGACCAGATTTTGGATTCTCTGACGTGGGTTTTAGACTGTGAAATGGAAAATTCCATTGCTGTGAAATCTCATGCAGTTTTTGTCCTCAAATCATTCGTCCAGAAGGCAAAGTCTGATGTTCTGCAAAGGCTCAAACTTGAGTTCTTcgaaaaaattgtgaaaatattaagaaatggaATAACCCAACAAGGGATCAATGCTGCTTTGCAGGTCTTATTAACCGCTTGTCCCTGGGGAAGAAATCGGCATTTCATGGTAGAAGCTGGTGCGGTTTTTGAACTGATAGAACTTGAATTAGACGCACCAGCTGAGAAGAGAACCACTGAGTTCATATTGGAAATACTGTTTCATCTGTGTTCTTGTGCTGAAGGGAGAGCTCGGTTTCTCAATCACAGAGGTTCCATTGCTGTGTTGACGGAGAGAATCTTAAAGGTTTCGCCGGCGGTCGATGACACAGCCATATTCATTCTGTCAGCGATATCTAAATTCTCTGGGACACAAATGGCGGTTCAAGAAATGTTGAAAATTGGAACTGTGACAAAGCTTTGCATGCTGCTGCAGGCTGATAATGCTACATATCTGAAAGACAAAGCAAGGGAAATACTGAAGGCTCATTCTGATGCTTGGAAAGATTCTCCTTGCTTTCCTGGAAGCTCTTTTTATGCAAGCTTGCATTA 1223 0.4154 MDEIEVPQYFICPISLQIMKDPVTALTGITYDRESIEQWLFNNENTSCPVTKQLLPKDSDLTPNHTLRRLIQAWCTQNASLGVERILTPKPPLDKFQVIKLLKDFGNPQLQLKTIRQLELLAAEKERNKKCLIEAGVPKAMFMFILSCFRKGQIDEGLEEALSLLHFVMVPEEEVKLLLAKNDQILDSLTWVLDCEMENSIAVKSHAVFVLKSFVQKAKSDVLQRLKLEFFEKIVKILRNGITQQGINAALQVLLTACPWGRNRHFMVEAGAVFELIELELDAPAEKRTTEFILEILFHLCSCAEGRARFLNHRGSIAVLTERILKVSPAVDDTAIFILSAISKFSGTQMAVQEMLKIGTVTKLCMLLQADNATYLKDKAREILKAHSDAWKDSPCFPGSSFYASLH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02340 407 Gene3D - 96 391 IPR011989 -
Bva04g02340 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bva04g02340 407 SUPERFAMILY RING/U-box 3 80 - -
Bva04g02340 407 SUPERFAMILY ARM repeat 99 374 IPR016024 -
Bva04g02340 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 401 - -
Bva04g02340 407 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Bva04g02340 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bva04g02340 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Bva04g02340 407 Coils Coil 115 135 - -
Bva04g02340 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Bva04g02340 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02340 Bva-Chr4 21853090 21854313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02340 2 397 U-box Gene Family AT3G11840 44.191 2.98e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02340 - - lja:Lj0g3v0014579.1 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02340 04 21853090 21854313 Bva04g02340 04 21853090 21854313 ECH