Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02339 ATGGAAGAGATCGATGTTCCTCCATTCTTCCTCTGCCCCATTTCCATAGAAATCATGAAAGATCCGGTTACTCTCTCCACAGGTATCACCTATGACAGAGAGAGTATTGAGAAATGGTTGTTTTCTGGGAAGAACAGGACTTGCCCGGTAACCAAACAACCACTATCAGATTCTTGTGATCTCACCCCCAACCATACTCTTCGACGATTGATTCAAGCTTGGTGTACAATGAACGCTTCTCACGGCATCCAAAGGATTCCAACACCTAAACCTCCAATCAACAAATCCCAGATCGCAAAACTCCTCAAAGATGCTCATCAATCCCCTCAGTTGCAGATTCAATGTCTCAGAACACTCAAAACCATTGCTTCTGAGAGTGAAACAAACAGGCGCTGCATGGAAGCTGCAGGTGCTGTTGAGTTCTTAGCCTCAGTTGTACATAACAACATAAATTCTGCAACTTTACCCGAAGAGGCCAGCCCAGAAGATGGGTTTGAAACATTGAGAACCAGTACTTCAGGTGATGAAGCCTTGAACATCCTCCACAGCCTTCATGTATCTGAAACTGGCATAAAGACTCTAATAGGCTTCAAAAATGGAGAATTTATTGTCTCCTTAACTAGAGTCATGCAGAGAGGAATCTATGATTCAAGAGCTTATGCTGTTCTATTGTTGAAATCCATATTTGAAGTTGCTGATCCGGTGCATTTATTCAGCTTAAGAACTGAACTGTTCGTCGAATTAGTACAAGTTTTAAAAGATCAGATTTCCCCGAAGGCCTCAAAAGCTGCACTCCAAACACTGATCCAAATCTCTCCTTGCGGAAGAAACAGGATCAAAGCGGTGGAAGCTGGGGCCGTTCCGGTTTTGATTGAGCTTCTCCTTGACTGTAAAGACAGAAAGCCCTGTGAAATGATGATGGTGGTATTGGACATCATGTGTAGCTGCGCTGAGGGACGAGCAGAGTTGTTGAGCCATGGTGCCGGCCTCGCCGTTGTGTCAAAAAAGATTCTAAGGATTTCTACAGCGGCAAACGATAGAGCAGTGAGGATTCTATTGTCCATTTCAAAGTTCTCTGCAACTCCTGCTGTTCTTCAAGAAATGCTGCAACTGGGTGTGGTGGCAAAGCTCTGTCTGGTGCTTCAAGCGGAGAGTGGAAACAAGGCAAAGGAAAAGGCCAGAGAGATACTTAAAATGCATGTTCGGGCTTGGAGGAATTCTCCATGTGTACCCAGCAGTTTGCTGTCTTCTTACCCAGTTTA 1262 0.4461 MQRGIYDSRAYAVLLLKSIFEVADPVHLFSLRTELFVELVQVLKDQISPKASKAALQTLIQISPCGRNRIKAVEAGAVPVLIELLLDCKDRKPCEMMMVVLDIMCSCAEGRAELLSHGAGLAVVSKKILRISTAANDRAVRILLSISKFSATPAVLQEMLQLGVVAKLCLVLQAESGNKAKEKAREILKMHVRAWRNSPCVPSSLLSSYPV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02339 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 210 - -
Bva04g02339 211 Gene3D - 5 193 IPR011989 -
Bva04g02339 211 PANTHER WDSAM1 PROTEIN 1 210 IPR045185 GO:0061630
Bva04g02339 211 SUPERFAMILY ARM repeat 7 176 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02339 Bva-Chr4 21845862 21847425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02339 1 210 U-box Gene Family AT2G35930 61.502 9.42e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02339 - - gmx:100809839 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02339 04 21845862 21847425 Bva04g02339 04 21845862 21847425 ECH