Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02338 ATGGAGAGAGGTTGGAAGCCTAATGTTGAGATATCACCAAATTGTCCAAGATGTGGTTCTTCCAACACCAAATTCTGCTACTACAACAACTACAGCTTAACACAACCACGGTATTTCTGCAAAGCCTGCAGAAGGTACTGGACTAAAGGAGGTTCTCTCCGCAATGTCCCCGTCGGCGGAGGATGCCGTAAAAATAGACGGGCAAATAGGATCGTGAGGCAAGCCACGGATTCTGTCCCCTCCAGAAACGGTGCCGCTGATAACTCAACTGGGCATTCTTATGATCAAAGAAAGAATCCATCTTGTAGCTCCTCAGTGGTGTCTGATTCTCCAAGGATTGATCTTGCGGTAGTTTATGCAAATTTTCTCGATCAAAAGCCAGATTCAAGAGCAGGGCGTGAGAAGCCTGAAATGGAAACTGTCCTTGATCCTTCTGTAGAGTATATTTCAAGCTTTTCAAACACAGAGGTTATCCCAACTTTGGCTATACCAGAAGAACTTGGTTTTAGTGGGTGCTTAAATATGTCCCAACATTCCATAGAATCCCATTTCAGTGAAGGTAATCAGTTGTACTATTGTGGGTTCAACTCTATGCAGGGGCATGAAGAAGATAGAATTGTGAAATATTCTGCTAGTCATGATACCATCAATTTTGAGTTGCCGCCATTGCCAGGAGAGGAGTCAGGTTCTCATGACATGATGTGGTCCAATTCTGAGATGATGGTAAACCATGACTTGCAAGCCACGCAACCACCAGCTTTTGGAACTGAAATTCATGATCCAGAGTTGTTGATGGGTGATTGGAGCCCTTTAGATTTGCCAAGGGATGCTTCCTTTTCCAGACCTTG 848 0.4434 MERGWKPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRANRIVRQATDSVPSRNGAADNSTGHSYDQRKNPSCSSSVVSDSPRIDLAVVYANFLDQKPDSRAGREKPEMETVLDPSVEYISSFSNTEVIPTLAIPEELGFSGCLNMSQHSIESHFSEGNQLYYCGFNSMQGHEEDRIVKYSASHDTINFELPPLPGEESGSHDMMWSNSEMMVNHDLQATQPPAFGTEIHDPELLMGDWSPLDLPRDASFSRP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02338 282 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Bva04g02338 282 MobiDBLite consensus disorder prediction 74 108 - -
Bva04g02338 282 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Bva04g02338 282 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 278 - -
Bva04g02338 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 278 IPR045174 GO:0003700|GO:0006355
Bva04g02338 282 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02338 Bva-Chr4 21841854 21842953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02338 5 277 C2C2-Dof Transcription Factor Family AT3G52440 38.488 1.28e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva04g02338 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02338 - - aprc:113871380 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02338 04 21841854 21842953 Bva04g02338 04 21841854 21842953 ECH