Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02333 atgaatgacttGTTCTCCGGCTCCTTCTCCCGCTTCCGTAGCGAGGAAGCGTCGCCTGGCCGGGACCACCATGTCATAGAGATGAGTGCCGCGACGGCGTCCACTGGTGGAGTCAATCTCGACAAGTTCTTCGCAGATGTGGAATCGATCAAGGAGGAGCTCCAGGAGCTGGAGCGCCTCAACCGGAATCTACTTAACTCTCACGAGCAGAGCAAGACACTCCACAATGCCAAGGCCGTTAAGGACCTTCGCTCTCGCATGGACAACGATGTTGGCCTTGCTCTCAAGAAGGCGAAGATCGTCAAGGTCAAATTGGAGGCTCTCGAGAGATCCAACGCCGCCAACCGGAGCGTTCCTGGATGTGGACCCGGTTCATCATCCGACCGTACACGCACCTCCGTGGTCAACGGTTTGAAGAAGAAGCTAAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCGTCGGAATATCGGGAGACTGTACAGCGTAGGTATTTCACCGTCACCGGCGAGAATCCAGATGAGAAGACCATCGACCTCTTGATCTCTACAGGTGAGAGTGAGACTTTCCTTCAGAAAGCCATCCAAGCACAAGGTAGAGGTAGGATTCTGGACACCATCAATGAAATTCAAGAAAGGCATGATGCTGTGAAGGAGATTGAGAAGAATCTCAAAGAGTTGCATCAAGTGTTCCTTGACATGGCGGTATTGGTGGAAGCTCAGGGTGAGCAATTGGACGATATTGAAAGCCATGTTGCAAGAGCAAACTCTTTTGTCCGGACTGGAGCACAGCACTTGCAGGTTGCGAGGAAGCACCAGAAGAACACCAGGAAATGGACTTGTTATGCTATTATACTTCTGCTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAGACCATGGGAAAATAATGGCAACAATAATAGTCAACCGGCTCCGGCTCAAACACCtccacctcctcctcctcctgcAACTTA 989 0.4944 MNDLFSGSFSRFRSEEASPGRDHHVIEMSAATASTGGVNLDKFFADVESIKEELQELERLNRNLLNSHEQSKTLHNAKAVKDLRSRMDNDVGLALKKAKIVKVKLEALERSNAANRSVPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQAQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVEAQGEQLDDIESHVARANSFVRTGAQHLQVARKHQKNTRKWTCYAIILLLVIILFVVLFTVRPWENNGNNNSQPAPAQTPPPPPPPAT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02333 329 PANTHER SYNTAXIN 12 309 IPR045242 -
Bva04g02333 329 Coils Coil 210 230 - -
Bva04g02333 329 Gene3D - 38 170 - -
Bva04g02333 329 Pfam SNARE domain 246 298 IPR000727 -
Bva04g02333 329 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Bva04g02333 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Bva04g02333 329 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva04g02333 329 CDD SNARE_syntaxin1-like 209 270 - -
Bva04g02333 329 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 12 309 - -
Bva04g02333 329 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Bva04g02333 329 CDD SynN 40 197 IPR006011 GO:0016020
Bva04g02333 329 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g02333 329 SMART SynN_4 35 161 IPR006011 GO:0016020
Bva04g02333 329 Gene3D - 207 303 - -
Bva04g02333 329 Coils Coil 135 159 - -
Bva04g02333 329 SMART tSNARE_6 205 272 IPR000727 -
Bva04g02333 329 Coils Coil 40 74 - -
Bva04g02333 329 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02333 Bva-Chr4 21804865 21807191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02333 28 325 SNARE and Associated Proteins AT3G11820 73.786 8.24e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02333 K08486 - tcc:18598421 483.796