Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02332 ATGAACGACCTGTTTTCCAGCCCCTTCTCCCGCTTCCATGAGGAACAAGTCCACGTGATCGAGATGACAGGCACGGCGACGTCGTCGGGCATGAACCTGGACAAGTTCTTCAAAGAAGTGGATTCGATTAGGGAAGAGTTGAAGGAGCTGGAGCGGCTGAACCAGAGCCTGCGCAACTCTCATGAACAGAGCAAGACCCTTTACAACGCCAAGGCTGCGAAGGACCTTCGTTCTCGCATGGACGCCGACGTTGCCCTAGCCCTCAAGAAAGCCAAGCTCGTTAAGCTCCGTTTGGAGGCGCTCGACAAATCCAATGAAGAAAGCCTGAACATGCCCGGCTGCGGACCCGGCTCATCTACGGACCGTACTCGGACCTCCGTGGTCAGCGGGTTAAGGAATAAGCTGAAAGACTCCATGGATAGCTTCAACACTCTCAGACAACAGATATCCTCGGAGTACAGGGAGACCGTACAACGTAGGTATTACACTGTCACCGGCGAAAATCCTGATGACAAAACCATTGACCTCCTCATTTCTACCGGTGAAAGCGAAACTTTTTTACAAAAGGCAATCCAGCAGCAAGGGAGAGCCACCATTATGGACACCATACAAGAGATTCAAGAGAGGCACGATGCAGTGAAAGAGATAGAGAGGAATCTGAACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTTCTGGTGCAAGCCCAAGGCGTTCACTTGAATAATATAGAGAGCCACGTGGCAAGAGCTAATTCGTTTGTAAGGGATGGGGTCCACCAATTGCATGTTGCAAAGAAGCACCAGAAAAACAGCCGAAAATGGACCTGTATTGCCATAATACTGCTTTTGATCATAGTCTTGATTATAGTTCTTCCAATTGTTCTAAGAAACTG 896 0.4955 MNDLFSSPFSRFHEEQVHVIEMTGTATSSGMNLDKFFKEVDSIREELKELERLNQSLRNSHEQSKTLYNAKAAKDLRSRMDADVALALKKAKLVKLRLEALDKSNEESLNMPGCGPGSSTDRTRTSVVSGLRNKLKDSMDSFNTLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDAVKEIERNLNELHQVFLDMAVLVQAQGVHLNNIESHVARANSFVRDGVHQLHVAKKHQKNSRKWTCIAIILLLIIVLIIVLPIVLRN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02332 298 Pfam SNARE domain 241 291 IPR000727 -
Bva04g02332 298 SMART tSNARE_6 198 265 IPR000727 -
Bva04g02332 298 Gene3D - 192 296 - -
Bva04g02332 298 Coils Coil 203 223 - -
Bva04g02332 298 CDD SynN 33 190 IPR006011 GO:0016020
Bva04g02332 298 Gene3D - 31 163 - -
Bva04g02332 298 SMART SynN_4 28 154 IPR006011 GO:0016020
Bva04g02332 298 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 13 293 - -
Bva04g02332 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Bva04g02332 298 PANTHER SYNTAXIN 13 293 IPR045242 -
Bva04g02332 298 Coils Coil 33 67 - -
Bva04g02332 298 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Bva04g02332 298 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva04g02332 298 CDD SNARE_syntaxin1-like 202 262 - -
Bva04g02332 298 SUPERFAMILY t-snare proteins 30 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02332 Bva-Chr4 21802551 21804269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02332 26 277 SNARE and Associated Proteins AT3G11820 70.238 2.34e-136 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02332 K08486 - gmx:100808718 414.461