Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02331 ATGGCTATGCaaactttctctttcaaaGAACATGAAGGAATTGTACCAAATTCTCTGGGACAGCTGTCATCTGCATCTTCAGGCCCCTGGTGGAATGCCTTTGGATCTCAATCAATTTATGGGGAGTCCTATGGCCCCGTCAAGACTTTCTCGTTAGAGCATACTAATAACTATGTTGACCAACTTGCTGCCACTCCCACTAAGCCAGCAGGGAGAGGAGCTGAACCACTGTTTGATAAAGGACATACAACtcagttcaccatctttccaGATGATTGTAAAATGTCAGCTGATGCACAAAAACCTCAGACAGCCATATCCCTGCAATCATCAGTTCCCGATTCTCGCGCTCGTTTTGAGCTTGGCTTCAATCAGCCTTTGatCTGTGCAAAATATCCTTACATGGATCAATTTTATGGGCTCTTCTCAGCTTATGGACCTCAAGTATCGGGCCGTATAATGCTGCCGCTTAACTTGACATCCGATGATGGACCCATTTATGTAAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAATCACGTGCAAAGGCTGTGCTGGAGAATAAACTTTCAAAACGTCGCACGCCTTATATGCATGAATCGCGCCATCTCCATGCAATGCGTCGACCAAGAGGTTGTGGTGGTCGTTTCTTGAACACAAGGAATCATAACAACGAAAATGGTAAAAGTGGAAGCGAAGTGAATAGAAGTGGTGAAAGGCAACTGAAGTCCAGTGGTTCTCAGAGTTCTGAAGTGCTGCAGTCTGAAGGTGGAACTTTGAATTCATCAAAGGAAACCAATGGCAGCAGTCCTAATATTTCAGGGTCAGAGGTGACCAGCAGCATGTATTCAAGGAGAGGTCTTGATGGCTTCACAGTCAGTCATCTTGGATCAGCTGTGCACTCTCTGACAGACATGCTAGATGGTGGGCGTGGTATCGTTATGCCCACAAAGTGGGTTGCAGCAGGAGGTAATTGCTGCAACCTTAACGTTTG 1001 0.4456 MAMQTFSFKEHEGIVPNSLGQLSSASSGPWWNAFGSQSIYGESYGPVKTFSLEHTNNYVDQLAATPTKPAGRGAEPLFDKGHTTQFTIFPDDCKMSADAQKPQTAISLQSSVPDSRARFELGFNQPLICAKYPYMDQFYGLFSAYGPQVSGRIMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKAVLENKLSKRRTPYMHESRHLHAMRRPRGCGGRFLNTRNHNNENGKSGSEVNRSGERQLKSSGSQSSEVLQSEGGTLNSSKETNGSSPNISGSEVTSSMYSRRGLDGFTVSHLGSAVHSLTDMLDGGRGIVMPTKWVAAGGNCCNLNV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02331 333 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 331 IPR001289 GO:0003700|GO:0006355
Bva04g02331 333 MobiDBLite consensus disorder prediction 203 283 - -
Bva04g02331 333 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 331 - -
Bva04g02331 333 MobiDBLite consensus disorder prediction 220 283 - -
Bva04g02331 333 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
Bva04g02331 333 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 165 219 IPR001289 GO:0003700|GO:0006355
Bva04g02331 333 Gene3D - 162 224 - -
Bva04g02331 333 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Bva04g02331 333 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Bva04g02331 333 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02331 Bva-Chr4 21796329 21801291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02331 1 331 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.944 3.49e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva04g02331 CBFB_NFYA 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02331 K08064 - gmx:100527677 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02331 04 21796329 21801291 Bva04g02331 04 21796329 21801291 ECH