Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02330 ATGACTGGAAGAAGGATCATGCtcgaaaatattgaaaatgacaGAGCTAGAAGAAATAGCTTTAGGAATAAAAGTGCAGGTTtggtgaagaagaaaagagagctAAGCATTTATTGCGATGTTGATTGCTTTATCATCAGCTATGATGGTGAAGGGGGTGAGCCTCTGGTGTGGCCAAGTGCTGAAAAAGTGCAGCAACTAATGCAGAGGTACCAGAGTATCCCGGTGCTGCATCGGTACCGGAATGTGCTGAATCAAGAGCATTGTCTTCGAGATAGAATTAACAAGCTGCAACTACAAGTTGAGAAGCGGCAAAGGGAGAATACGGAGAAGGAGATGGCTAATGTCATGGACCAGATTTTTCACCAAGGTAAAAGTTTGTGTGAATTTAATGTTACTGAACTGATCAATTTGGTTTGTTTcacagaaaagaaagtgagGGAATATAGGGGGAGTATGGTTTCTTTCAATCTACCATGCTCCTTTCCTCCAGAGCAGCCATGGTTCGTCAATCTCTTGAGAGAAACCAATGGCGTAAACGGCGGTGCAAACATCTACACAGTGTTGCCAGCAGATGAAGTCAATTCTAGTGCTAGCAATGCTGTGATTGGAGGAAATCATCGGTTAGGGATACCTTATGGCAATTTTGGAGGGCCTAATGGTGGATTTGATGTAAGCTTACCTTATGATAACTTTGGGGTAAGGCTACCGTCTGAGACCTTTGGAGGGAACATCATTCAAAACGACATGGCGTTGAGATCATTCGATGGAAATTTGAGAAGTAGCTTTGGTGGAATTAACATGGCGAATTCTGATGGCAATGTTGTTGACAATGGACAAAATCTAGGCGAAGGATTACTGCCATTACAGCCTCATGGTGGAAAATTTTCAAGGGGAACTGGAATGCCTTTTGGATCATTTGGAGGAAGCTCTCTTGGGGGACCTAATGATATTTTCAGGACATGGCCAAATCATTCTTCTCCATG 986 0.4067 MTGRRIMLENIENDRARRNSFRNKSAGLVKKKRELSIYCDVDCFIISYDGEGGEPLVWPSAEKVQQLMQRYQSIPVLHRYRNVLNQEHCLRDRINKLQLQVEKRQRENTEKEMANVMDQIFHQGKSLCEFNVTELINLVCFTEKKVREYRGSMVSFNLPCSFPPEQPWFVNLLRETNGVNGGANIYTVLPADEVNSSASNAVIGGNHRLGIPYGNFGGPNGGFDVSLPYDNFGVRLPSETFGGNIIQNDMALRSFDGNLRSSFGGINMANSDGNVVDNGQNLGEGLLPLQPHGGKFSRGTGMPFGSFGGSSLGGPNDIFRTWPNHSSP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02330 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Bva04g02330 328 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Bva04g02330 328 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Bva04g02330 328 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva04g02330 328 Coils Coil 94 119 - -
Bva04g02330 328 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Bva04g02330 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 150 - -
Bva04g02330 328 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02330 Bva-Chr4 21787847 21788833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02330 1 182 Type I MADS-box Gene Family AT2G40210 27.322 1.89e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva04g02330 SRF-TF 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02330 - - tcc:18598433 131.724