Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02328 ATGAACAACACAACAGATACTGCTGGTGGGTTCCTTGGCTCTAACAATATCAGTGGCTTAGGCTACGGAATAGGAGTTTCGGTTGGAATTCTCCTGCTCATTACAACTATCACCCTCACCTCCTACTTCTGCACCCGCACACAGGCACCGACAGCCCCAGCAGCGACTCGGAGAAATGCCCCCAGTTTCCTTGAACCACAACACTCTGTAATCCATGTGGGGCTAGATGAAGCTACAATTCTGAGTTATCCAAAGCTGCGCTACTCTGAAGCCCAGATTCAAAAGTCAGATTCCACATCTACATGCTGCTCCATTTGCCTGCGAGATTACAAGAACACCGATATGCTTCGCCAACTTCCTGATTGTGGACACCTCTTCCATATCAAGTGCATAGACCCATGGTTGAGACTCAATCCCTCTTGTCCACTATGCAGAACGTCTCCAATGCCAACACCACTCTCAACTCCTCTCGCCGAAGTGGTTCCATTAGCAAGGAGGCGAGATTA 506 0.4901 MNNTTDTAGGFLGSNNISGLGYGIGVSVGILLLITTITLTSYFCTRTQAPTAPAATRRNAPSFLEPQHSVIHVGLDEATILSYPKLRYSEAQIQKSDSTSTCCSICLRDYKNTDMLRQLPDCGHLFHIKCIDPWLRLNPSCPLCRTSPMPTPLSTPLAEVVPLARRRD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02328 168 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Bva04g02328 168 Pfam Ring finger domain 103 145 IPR001841 -
Bva04g02328 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Bva04g02328 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 168 IPR045899 -
Bva04g02328 168 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 168 - -
Bva04g02328 168 SMART ring_2 103 144 IPR001841 -
Bva04g02328 168 CDD RING-H2_PA-TM-RING 102 145 - -
Bva04g02328 168 SUPERFAMILY RING/U-box 86 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02328 Bva-Chr4 21783517 21784247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02328 10 164 C3H Transcription Factor Family AT2G35910 63.291 4.68e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02328 - - gmx:100811799 249.98