Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02315 ATGTACTTTGATAAGTTTGTATACGAGGGAATACCTGCAAATTGCAATAATGAGTCATTGTCCATTGTATCGTACAGGTCCAGGTCCAGCATTCCCTGGATTGTGAATTCAAGCCTCCTGCTTGATGGGCGTTCCCTCACTTTCTTGAACCTTTTTTTCGAGCTTTCCAACGTCTCAGTGGAGGTTCTAGACATGGAAGGCAAGAATACTGAAAGTCATATGGTATCAACTACTGCCTTTGTGGAAGGGGGGATTCAAGAAACCAGTGGTGATGCTTGCAGCATATGCCTTGAGGATTTTGGTGAAAGTAATCCCTCAACGGTGACTACTTGCAAGCATGAGTTTCACCTTCAATGCCTTCTTGAGTGGTGTCAGAGAAGCTCTAAGTGTCCTTTGTGTTGGCGATCTATGAGCTTGAAGGATCCCTCGAGTCAAGAATTGCTTGAGGCAGTAGAGCGGGAGAGGACCTTGAGAAATACTCCATCAAGAAATGCTGCTACATTTCGTCATTCTGCACTTGGTGATTTTGAATTGCAGCGTTTACCCGATGGTGTAAATCATGTGGATTTTGAAGAGCGGATAATTCAACATTTAGCTGCTGCAGCAGCAGCGATGAGCAGAACGCAACACCTGGGTTGGAGGGAAGGGCAAAGAGCTAGGCCATCATCAGGCCATGGTCGTCCACAGTTTTTAGTATTCTCAACTCGGCCTAGTGTGCCTACTTCTGGTCCCGTTTCACCTGCTGGAGGGGGAACTGAACCTGCTGCAATTCCTGTGGGAAGTCCGTCTACCCCACTTACATCTGATCGAGATGAACCATCACAGCAGATTGCACACCTTCAAACTCGGAGTGCTTCTTTACCTTCCAGATATGCTCTCATGGGAACGAATCATCAACAAGTTTACTCTGATGATCGAGGCTCTACTGTTCATTCTTCACCACCAAACCAAGATAAAGCAGTTCAGACATTTTCGGAGTCTCTGCGGTCCAGACTAAATTCAGCGTCCATGAGATACAAAGAGTCAATTTCGAAGAGCACTAGGGGATGGAAAGAGAGGCTATTTTCTCGTAATTCTTCCATGTCTGATCTTGGTTCAGAAGTTAGGAGAGAATTGAATGCTGGGATTGCTAGTTTTGGCGGATCGTTCTTTTGCGGAGAGAAGCAACCGCGTTTGAAGgTTCACTATTTCTCCAGAGTCCAGCCATG 1208 0.4594 MYFDKFVYEGIPANCNNESLSIVSYRSRSSIPWIVNSSLLLDGRSLTFLNLFFELSNVSVEVLDMEGKNTESHMVSTTAFVEGGIQETSGDACSICLEDFGESNPSTVTTCKHEFHLQCLLEWCQRSSKCPLCWRSMSLKDPSSQELLEAVERERTLRNTPSRNAATFRHSALGDFELQRLPDGVNHVDFEERIIQHLAAAAAAMSRTQHLGWREGQRARPSSGHGRPQFLVFSTRPSVPTSGPVSPAGGGTEPAAIPVGSPSTPLTSDRDEPSQQIAHLQTRSASLPSRYALMGTNHQQVYSDDRGSTVHSSPPNQDKAVQTFSESLRSRLNSASMRYKESISKSTRGWKERLFSRNSSMSDLGSEVRRELNAGIASFGGSFFCGEKQPRLKVHYFSRVQP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02315 402 MobiDBLite consensus disorder prediction 212 278 - -
Bva04g02315 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 26 378 - -
Bva04g02315 402 Pfam Ring finger domain 92 133 IPR001841 -
Bva04g02315 402 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 26 378 - -
Bva04g02315 402 MobiDBLite consensus disorder prediction 261 278 - -
Bva04g02315 402 ProSiteProfiles Zinc finger RING-type profile. 93 133 IPR001841 -
Bva04g02315 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 142 IPR013083 -
Bva04g02315 402 SUPERFAMILY RING/U-box 86 140 - -
Bva04g02315 402 SMART ring_2 93 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02315 Bva-Chr4 21711405 21716484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02315 91 141 C3H Transcription Factor Family AT4G00335 50.980 1.08e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02315 K19043 - gmx:100803582 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02315 04 21711405 21716484 Bva13g02245 13 17330147 17334092 BWGD
Bva04g02315 04 21711405 21716484 Bva04g02315 04 21711405 21716484 ECH