Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02311 atgacGAGGTCATCTTCAAAAACAGCTCTCTTCTCCAGCTCTTCTTCCTACTTTTGCCAGAAACGtgtTGAGGTGGGAATGGAGAAAGTGAATGCATGTGGGTTGGCTCGAACGAAATCGGATCAGCTGGCGGAGTCGGTGGTGGCGGCTCTAAAGTCACCTCCGTCGAGCGAGTCGCTAGTCGCGGAGGGTGGCGGAAGCGGTGGTAGTGGTGGAGCCATATCGAGGAAGTCGAGCAGGCGGTTAATGGTGTCGCCGGGGCGCAGCGGAGGCAGAAACACGCACATCAGGAAGTCAAGAAGTGCTCAGATGAAGTTAGAGTTGGGTGAAGTGAGCAGTGGCGCGGCTCTTAGCCGAGCTTCGAGTGCCAGCTTGGGtctctccttctccttcacTGGCTTCACTGTTCCTCCCGATGAGATTGCTGACTCAAAACCCTTCAGCGATGATGATAGTCCGGAGGATATTGAAGCTGGAACTCGTCATAAGTTTCAAACGGAACCCACTTTGCCAATTTTTCTCAAGTTCACGGATGTGACCTACAAGATAGTGATCAAAGGCATGACTACAAGTGAGGAAAAGGAGATCTTGAATGGGATCACTGGTTGTGTGAATCCAGGGGAAGTTTTAGCCTTGATGGGTCCCTCAGGAAGTGGAAAGACTACTCTTTTGAATCTTCTTGGAGGTAGATTAAGGCAGCCCACAGTTCGTGGCTCTATTACTTACAACGACAGACCATATTTTAAGTTCCTAAAGAGCAGGATAGGATTTGTGGCTCAAGATGATGTTCTGTTTCCTCACCTCACTGTGAGAGAAACATTGACATACGCAGCCCGCTTAAGGTTGCCGAAGACTTTAACCAAGGAGCAGAAGGAAAAACGAGCCATAGATGTCATCCATGAGCTTGGCTTAGAGAGGTGCCAAGACACCATGATAGGTGGTTCTTTCGTTCGTGGAGTATCTGGCGGAGAGAGGAAGAGAGTTAGTATTGGCAATGAGATCTTAATTaatccttctcttctttttcttgacgAACCAACTTCTGGTTTGGATTCTACAACAGCTTTGAGGATTGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACAGTGGTGACGACTATCCACCAACCATCAAGCAGACTGTTTCACAAATTTGATAAGTTGATTCTTCTGGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCAGAGGCCATGGTTTACTTCCAGACTATAGGATGTTCCCCTCTTATTGCCATGAACCCAGCAGAATTTTTGCTAGACCTTGCAAATGGAAATATCAATGATGTTTCTGTTCCATCTGAGTTAGAGGATAAAGTGCAAATGGGTAATGCAGAAACTGAAACACAGAATGGGAAACCATCACCAGCAGTTGTACATGAGTATCTGGTGGAAGCCTATGAGAGCCGAGTTgcagaaacagaaaagaaaaaactaatgGTTCCTCTACCACTTGATGAAGAAGTGAAGTCTAAGGTCTCTTCTAAAAGAGAGTGGGGAGCAAGCTGGTTTGAGCAATTTTCCATGTTATTCTGCAGAGGAATTAAAGAGAGACGGCACGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTCTCTACTGCAGTCATTTTAGGATTACTTTGGTGGCAATCAGATGCTAAAACCCCAAAGGGTCTTCAAGATCAGGCAGGGCTGCTTTTCTTTATTGCTGTCTTTTGGGGATTCTTTCCTGTTTTTACAGCAATATTTACATTTCCTCAAGAGAGAGCCATGCTGAACAAGGAAAGAGCAGCTGACATGTACAGACTAAGTGCATACTTTGTGGCTAGGACAACAAGTGATCTTCCATTAGACCTCATATTACCAGTACTTTTCCTCGTGGTCGTTTATTTCATGGCAGGTTTGAAACTCAGTGCAGGTCCATTTTTCCTCAGTATTCTCACAGTTTTCCTCTGCATCGTTGCAGCTCAGGGACTTGGACTAGCCATTGGGGCTACACTTATGGACTTGAAAAGAGCAACAACCTTGGCTTCAGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTCTTTGTGAAGAAAGTCCCAATATTTATAGCTTGGATCCGCTACATATCTTTCAACTATCACACTTACAAGCTTCTGCTCAAGGTTCAATATAAACACATTACCACAAGCGTAAATGGGATGACAATCGACAGTGGTTTCACAGAGGTCGCCGCTCTAATAGCCATGGTTTTTGGTTACCGTTTTTTGGCTTACCTTTCTTTGAGACGGATGCAAGTTCAATCTGAAGCTTA 2309 0.4392 MTRSSSKTALFSSSSSYFCQKRVEVGMEKVNACGLARTKSDQLAESVVAALKSPPSSESLVAEGGGSGGSGGAISRKSSRRLMVSPGRSGGRNTHIRKSRSAQMKLELGEVSSGAALSRASSASLGLSFSFTGFTVPPDEIADSKPFSDDDSPEDIEAGTRHKFQTEPTLPIFLKFTDVTYKIVIKGMTTSEEKEILNGITGCVNPGEVLALMGPSGSGKTTLLNLLGGRLRQPTVRGSITYNDRPYFKFLKSRIGFVAQDDVLFPHLTVRETLTYAARLRLPKTLTKEQKEKRAIDVIHELGLERCQDTMIGGSFVRGVSGGERKRVSIGNEILINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMVYFQTIGCSPLIAMNPAEFLLDLANGNINDVSVPSELEDKVQMGNAETETQNGKPSPAVVHEYLVEAYESRVAETEKKKLMVPLPLDEEVKSKVSSKREWGASWFEQFSMLFCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDAKTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFVARTTSDLPLDLILPVLFLVVVYFMAGLKLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFIAWIRYISFNYHTYKLLLKVQYKHITTSVNGMTIDSGFTEVAALIAMVFGYRFLAYLSLRRMQVQSEA 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02311 769 Pfam ABC-2 type transporter 514 723 IPR013525 GO:0016020|GO:0140359
Bva04g02311 769 ProSitePatterns ABC transporters family signature. 320 334 IPR017871 GO:0005524
Bva04g02311 769 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 420 IPR003439 GO:0005524
Bva04g02311 769 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 763 - -
Bva04g02311 769 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 56 763 - -
Bva04g02311 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 410 IPR027417 -
Bva04g02311 769 Gene3D - 173 414 IPR027417 -
Bva04g02311 769 CDD ABCG_EPDR 171 402 - -
Bva04g02311 769 MobiDBLite consensus disorder prediction 51 104 - -
Bva04g02311 769 SMART AAA_5 206 397 IPR003593 -
Bva04g02311 769 Pfam ABC transporter 197 348 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02311 Bva-Chr4 21691779 21698370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02311 141 434 Calmodulin-binding Proteins AT2G36910 27.333 6.91e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02311 K05681 - gmx:100798801 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02311 04 21691779 21698370 Bva13g02250 13 17351808 17359060 BWGD
Bva04g02311 04 21691779 21698370 Bva04g02311 04 21691779 21698370 ECH