Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02302 ATGGCATGTTTATGGCTTCTTGGCCagcaattttgttttcctctttgCAGAGTAACAATCTGTGAAATGGAGTCTCGTATAGaagaaaaagcggCGGCAGTTCCCTCGCTCTTCGTCTCAGTCTTCGTCGTTGCGCATCTCAGGATGGAGTCTCAAGTGAAGCATGCTGTGGTTATTAAGGTTATGGGACGTACTGGATCAAGAGGGCAGGTGACTCAGGTCAGAGTCAAGTTTCTGGATGATCAGAACCGTTATATTATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATCCTCACTCTGCTCGAGTCTGAAAGGGAAGCAAGGAGGTTGCGTTA 341 0.434 MACLWLLGQQFCFPLCRVTICEMESRIEEKAAAVPSLFVSVFVVAHLRMESQVKHAVVIKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02302 113 CDD S1_S28E 54 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva04g02302 113 Pfam Ribosomal protein S28e 52 112 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva04g02302 113 Gene3D - 48 113 IPR012340 -
Bva04g02302 113 PANTHER 40S RIBOSOMAL PROTEIN S28 49 113 - -
Bva04g02302 113 SUPERFAMILY Nucleic acid-binding proteins 49 113 IPR012340 -
Bva04g02302 113 Hamap 30S ribosomal protein S28e [rps28e]. 49 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva04g02302 113 ProSitePatterns Ribosomal protein S28e signature. 104 112 IPR028626 -
Bva04g02302 113 PANTHER 40S RIBOSOMAL PROTEIN S28 49 113 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02302 Bva-Chr4 21633914 21635827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02302 49 113 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 1.31e-36 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02302 K02979 - csv:101217106 102.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02302 04 21633914 21635827 Bva04g02302 04 21633914 21635827 ECH