Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02294 ATGGCATCGAGATTCTGGACACAGGGTGGTAGTGACTCTGAGGAGGAGGAGAGCgattttgatgaagaaattGATGATGTTGATGTTCCCACTAACCAAGAAACTACTAAGAGCAAATACTTACAAACGAATGATAGTGATAGTGATGACTCTGATGGTCAGAGGCGTGTTGTTAGGTCAGCTAAAGACAAACGTTTTGAGGAGATGTCTTCTACGGTGGACCAAATGAAGAATGcaatgaaaattaatgactGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAATAAACAACTTGAGAAAGTCATGCGTGTCACCGAGTCTGAGAAGGTCCCAACACTTTATATTAAGGCACTTGTGATGTTGGAGGACTTCTTAGCTGAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCAAAAGCCTTGAACTCAATGAAGCAGAAACTGAAGAAGAACAATAAGCAGTATGAGGATTCGATTAATAAATATAGGGAGAATCCTGAGagtgagaaggaaaaagacGAAGAGACAGAGGAGGACGAGGAAAGTGAAGCTGAAGAAATAATTGAGCCTGACGATATTCCAATCAAATCAGACTCTGACAGTGACGAGCCTGGAGATGATAAGGAGGATGCTAATGATGGCCCTTGGGATCACAAGCTTAGCAAGAAAGACAGACTTATGGATAAGCAGTTCATGAAAGACCCTAGTGAGATCACTTGGGAAATGGTAAACAAGAAGTTCAAAGAGATTGTAGCAGCTAGGGGTAGGAGGGGAACAGGGAGGTTTGAACAGGTTGAGCAGCTGACATTCTTAACCAAAGTTGCTAAGACGCCTGCACAGAAGCTGCAAATTCTCTTTAGTGTTGTTTCTGCTCAATTTGATGTTAATCCAGGTCTCAATGGGCATATGCCTATACATGTTTGGAAGAAATGTGTTCAAAATATGATGGTCATTCTTGATATTCTGGAGGGGAATAGGAACATTGTGGTTGATGATTCAGTAGAGCCTGATGAGAGTGAAACTCAGAAGGGGCCAGACTATAATGGACCAATTCGGGTTTGGGGGAATTTAGTTGCTTTTCTCGAAAGGATAGATACTGAGTTTTTTAAGAGCTTGCAATGCATAGATCCTCATACTCGTGATTATGTTGAGAGACTCAGGGATGAGCCCATATTTTTGGTTCTTGCTCAGAATGTGCAGGAGTATCTTGCAAGGGTTGGAGATTTCAAAGCTGCTTCTAAAGTGGCTTTGAAGCGGGTTGAACTCATCTATTACAAGCCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACTGAAAATGGAGATAGTGGAGAAGCTCGTGAGCAGCTGAAAGGTTTTGAGGACACAAGAATTCCTGCTCCATTTGTCATTACTCCTGAGATTGTGCCTCGGGAACCTACTTTTCCAGAGAATAGCAGGACCCTAATGGATATGTTGGTGTcccttatatataaatatgggGATGAGCGTACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCTCAACAGCTCGTGATATGTTGCTTATGAGTCATTTGCAAGATGGCATTCAACTTATGGACATTTCATCACAGATACTTTTTAACAGGGCTATGTCGCAGTTGGGTTTATGTGCTTTTCGGGTTGGATTGATTGTGGAAGCACATGGTTGTCTCTCTGAACTTTATTCTGCTGGAAGGGTGAAGGAGCTTCTTGCACAAGGTGTCGCACAAAGTCGGTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGGAGACGTCAAATGCCATATCATATGCACATAAATCTTGAGCTCTTGGAGTCCGTGCATCTTATATGTGCTATGCTTCTGGAAGTCCCCAACATGGCAGCCAATGTGCATGATGCAAAGCGCAAGGTCATTAGCAAGAACTTCAGGCGATTGCTTGATGTTAGCGAAAAGCAAACATTCACAGGCCCCCCTGAAAATGTCAGAGATCACGTGATGGCTGCAACAAGGGCCCTTAGCAAGGGAGATTTTCAAAAGGCTTTTGATGTTATCAAGTCCCTTGATGTATGGAAGTTTGTTAGAAATCGTGATACAGTACTAGAGATGCTGAGAGACAAAATTAAGGAGGAAGCATTGAGGACGTACCTCTTTACCTTTGCTTCCTCTTATGATTCTCTGAGCCTTGAACATCTAACCAAAATGTTTGACCTGTCTGCTGCTCACACTCATAGCATTGTTAGTAGGATGATGATCAACGAGGAGCTCCATGCAAGCTGGGACCAGCCAAGTGGATGCATTGTTTTCCAGGCTTGTGAGAACTCGAGGTTACAGGCGTTAGCATTCCAGTTGACTGAGAAATTATCCATCATTGCCGAGAGTAATGAAAGGGCACTAGAGGCAAGAATAGGTGGTGGTGGATTGGATCTGCCTATAAGGCGTAGAGATAGCCATGACTACGCTGCAGCTGCCGCTAGTGCAACAGCTCCATTGGGTGGTAGATGGCAAGAATTATCCCAAACTCAGCCAAGACAAGGTAGCAGTGCGGGACGCACAGGATATATTGGTGGCGGAAGGCCGTTCCCCAATGCCGGCGGGAGTGGAAGGCGAGGAGCAGGTGCAGGCTATCAGACTGGTTATGGAAGGTATACTCAGAGTAGTTCAGGATTGAGGGGTTCCCAGGTGGATGTATCTAATCGTATGGTTAGTCTTAAGGGAGTTCGAGCTTG 2771 0.432 MASRFWTQGGSDSEEEESDFDEEIDDVDVPTNQETTKSKYLQTNDSDSDDSDGQRRVVRSAKDKRFEEMSSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLAEALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDSINKYRENPESEKEKDEETEEDEESEAEEIIEPDDIPIKSDSDSDEPGDDKEDANDGPWDHKLSKKDRLMDKQFMKDPSEITWEMVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLNGHMPIHVWKKCVQNMMVILDILEGNRNIVVDDSVEPDESETQKGPDYNGPIRVWGNLVAFLERIDTEFFKSLQCIDPHTRDYVERLRDEPIFLVLAQNVQEYLARVGDFKAASKVALKRVELIYYKPQEVYDAMRKLAELTENGDSGEAREQLKGFEDTRIPAPFVITPEIVPREPTFPENSRTLMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDMLLMSHLQDGIQLMDISSQILFNRAMSQLGLCAFRVGLIVEAHGCLSELYSAGRVKELLAQGVAQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAANVHDAKRKVISKNFRRLLDVSEKQTFTGPPENVRDHVMAATRALSKGDFQKAFDVIKSLDVWKFVRNRDTVLEMLRDKIKEEALRTYLFTFASSYDSLSLEHLTKMFDLSAAHTHSIVSRMMINEELHASWDQPSGCIVFQACENSRLQALAFQLTEKLSIIAESNERALEARIGGGGLDLPIRRRDSHDYAAAAASATAPLGGRWQELSQTQPRQGSSAGRTGYIGGGRPFPNAGGSGRRGAGAGYQTGYGRYTQSSSGLRGSQVDVSNRMVSLKGVRA 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02294 923 MobiDBLite consensus disorder prediction 1 72 - -
Bva04g02294 923 Pfam PCI domain 656 784 IPR000717 -
Bva04g02294 923 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 885 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva04g02294 923 Gene3D - 727 792 IPR036388 -
Bva04g02294 923 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 922 - -
Bva04g02294 923 SMART PINT_4 717 805 IPR000717 -
Bva04g02294 923 MobiDBLite consensus disorder prediction 177 194 - -
Bva04g02294 923 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 717 805 - -
Bva04g02294 923 MobiDBLite consensus disorder prediction 155 176 - -
Bva04g02294 923 MobiDBLite consensus disorder prediction 43 71 - -
Bva04g02294 923 ProSiteProfiles PCI domain profile. 616 788 IPR000717 -
Bva04g02294 923 MobiDBLite consensus disorder prediction 847 863 - -
Bva04g02294 923 SUPERFAMILY "Winged helix" DNA-binding domain 713 788 IPR036390 -
Bva04g02294 923 MobiDBLite consensus disorder prediction 846 911 - -
Bva04g02294 923 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 648 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva04g02294 923 MobiDBLite consensus disorder prediction 12 29 - -
Bva04g02294 923 MobiDBLite consensus disorder prediction 893 911 - -
Bva04g02294 923 Coils Coil 144 171 - -
Bva04g02294 923 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 922 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva04g02294 923 MobiDBLite consensus disorder prediction 133 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02294 Bva-Chr4 21600399 21604432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02294 1 923 Eukaryotic Initiation Factors Gene Family AT3G56150 67.996 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02294 K03252 - gmx:100779751 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02294 04 21600399 21604432 Bva04g02294 04 21600399 21604432 ECH