Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02284 ATGAAGACTTCATGGGCGGATTCTGTTGAAAATTCAGTCGTTGGGCCTGATAAAAATGTCTTACCTCGCCCTTCCCGCTCAACATATGTTCCTCCACATCTTCGTAATAGGCCGCCATCTTCAGAACCACCTGTAACATCAAATTCATCTTTACCAGCTAATGATCGGGTGAATGCTGGTGGACCTGCTGTTGGATCTCGTTGGGGCAGTTCTGCTAAGCCAGATATTGGCCGCCAAGGGTATGGTCAAGGATATGGTTATAGTGGTCGAACTGGCGGTGGTAGGAACAATAGAAATGGAGGTTGGGATCATGGAATGGAGCGCCAAGTGAACCCTTTTGCGGATGATGAAGCTACGGAAGATGCTTTTAATGAGCAAGAAAATTCAGGCATAAATTTTGATGCTTATGAGGATATCCCTGTGGAGACTAATGGGGAGAATGTCCCTCCACCTGTTAATACATTTGCAGAAATAGATTTGGGCGAggaattaaatcaaaatattcggAGATGCAAGTATGTCAAACCAACTCCAGTTCAGCGTTATGCCATACCAATTTCTATTGCCGGTCGTGACTTGATGGCTTGTGCTCAGACAGGATCAGGGAAAACAGCTGCCTTTTGCTTTCCTATTATTAGTGGAATCCAGAAGGAGTTGCAGTATATTCAAAGACCACGTGTAGCACGGACTGCTTTCCCTCTGGCTCTTATCCTCTCCCCCACAAGGGAGCTTTCATGTCAGATACATGACGAGGCCAAAAAGTTTTCCTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACAGATCAGCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGATTGGTAGATTTGCTAGAGAGGGCTAGGGTCTCATTGCAGATGATCAGGTATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGATTTGAGCCTCAAATAAGAAAGATTGTCGAACAAATGGACATGCCTCCTCCAGGCATCAGACAGACAATGCTATTTAGCGCTACTTTTCCCAGAGAGATACAGAGACTGGCAGcagattttctttcaaattatgtGTTTCTAGCAGTTGGAAGGGTTGGTTCAAGCACCGATCTCATTGTTCAAAGAGTAGAATATGTCCTGGAGTCTGACAAAAGAAGCCACCTTATGGACCTTCTTCATGCTCAGAGAGAAAATGGACTTTATGACAAGCAAGGTTTGACATTAGTTtttgtcgaaacaaaaaaaggagCTGATGCATTAGAACACTGGTTATGTATCAATGGGTTTCCTGCAACCAGCATTCATGGTGACAGAACACAACAGGAAAGGGAACTGGCACTGAGGTCGTTCAAGAGTGGAAACACACCGATTTTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATCCCACGCGTAGCTCACGTGGTAAATTTTGATCTCCCCAATGACATTGACGATTACGTACACAGGATAGGGCGAACGGGGCGTGCCGGTAAAATGGGACTTGCAACAGCGTTCTTCAACGACAATAATCTGTCATTAGCTAAGCCATTGGCTGAGCTAATGCAAGAGTCAAATCAAGAAGTGCCTGCATGGCTTACCCGTTATGCAGCAAAGGCTTCTTTTGGCGGTGGTGGCGGCAGAAACCGCAAGGCTGGGGGAGCTCGTTTTGGTGGCCGCGATTTTAGAAGGGAGGGCTCGTTTACTAAAGGTACAGAATACTATGGTGGAGCAGCTGGAGCTGGAGCTGGATATGGGGTTCCTGCCAGTTATGCCACGGCATATGGTTCTGGTGTAACTAGTGCTTGGGATTA 1844 0.4523 MKTSWADSVENSVVGPDKNVLPRPSRSTYVPPHLRNRPPSSEPPVTSNSSLPANDRVNAGGPAVGSRWGSSAKPDIGRQGYGQGYGYSGRTGGGRNNRNGGWDHGMERQVNPFADDEATEDAFNEQENSGINFDAYEDIPVETNGENVPPPVNTFAEIDLGEELNQNIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIQKELQYIQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAQISQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGIRQTMLFSATFPREIQRLAADFLSNYVFLAVGRVGSSTDLIVQRVEYVLESDKRSHLMDLLHAQRENGLYDKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLAELMQESNQEVPAWLTRYAAKASFGGGGGRNRKAGGARFGGRDFRREGSFTKGTEYYGGAAGAGAGYGVPASYATAYGSGVTSAWD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02284 614 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 40 583 - -
Bva04g02284 614 Gene3D - 108 371 IPR027417 -
Bva04g02284 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Bva04g02284 614 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 40 583 - -
Bva04g02284 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 524 IPR027417 -
Bva04g02284 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Bva04g02284 614 Gene3D - 372 551 IPR027417 -
Bva04g02284 614 SMART ultradead3 172 384 IPR014001 -
Bva04g02284 614 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Bva04g02284 614 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Bva04g02284 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Bva04g02284 614 MobiDBLite consensus disorder prediction 40 55 - -
Bva04g02284 614 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Bva04g02284 614 CDD SF2_C_DEAD 381 517 - -
Bva04g02284 614 MobiDBLite consensus disorder prediction 1 108 - -
Bva04g02284 614 SMART helicmild6 427 508 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02284 Bva-Chr4 21562218 21566627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02284 151 540 Eukaryotic Initiation Factors Gene Family AT3G19760 31.122 4.66e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02284 K11594 - cpap:110811694 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02284 04 21562218 21566627 Bva04g02284 04 21562218 21566627 ECH