Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02272 ATGTTGTGCTGTGGAGGTGCGGAGGAGGAGAGCGGCGGCCTACCTCCAAACCAATCCACCGCACCACCAAGAGGGGGTAGTACATACGGTGGCGGAGCAGGCGGTGACAGAGGAGAGCCTAGAAGCGGACAAGCTGTCAAGGGTGGCGGTGCTCCACAGcaagatttaaaaattgagataCCCGCTATTCCATTGGATGAGCTAAATAGGTTAACAGACAACTTTGGTTCAAGCGCTTTGATTGGAGAAGGTTCTTATGGACGGGTTTTCTCTGCAAAGTTAAACGATGGTCAACCTGTAGCAATCAAGAAGCTGGATGCAAGTTCTTCACAAGAACCAGACTCTGATTTTGCTGCACAGCTAGCTGTAGTTTCAAGGCTGAAACATGAACATTTTGTGGAGTTGATTGGATATTGCTTGGAGGAAAACAACAGAATTTTGGTTCTTGAATATGCAACTTTGGGTTCTTTGCATGACATCTTGCATGGAAGAAAAGGTGTACAAGGGGCTGAACCTGGTCCAGCTCTAAACTGGAACCAAAGAGTAAAAATTGCATTTGGTGCAGCAAAGGGCCTTGAATATCTGCATGAAAAGGTTCAGCCTTCTATAGTTCATCGCGATGTCAGATCCAGCAATGTCTTATTGTTTGATGACTACTTGTCCAAGATTGCCGATTTCAACTTGACAAATCAGTCATCTGATACAGCAGCTAGGCTACATTCAACCAGAGTCTTGGGAACATTTGGCTACCATGCTCCAGAGTATGCCATGACTGGGCAGATAACTCAAAAGAGTGATGTTTACAGTTTTGGAGTAGTTCTTTTAGAACTCTTGACTGGAAGAAAGCCTGTAGACCATACAATGCCAAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGTGAGGACAAGGTGAAGCAATGTGTGGATCCAAAGCTAAACAATGACTACCCTCCAAAGGCAGTTGCTAAGTTGGCAGCGGTTGCAGCACTTTGTGTTCAATATGAAGCTGATTTCCGGCCGAACATGACTATTGTTGTGAAAGCCCTGCAGCCACTTCTCAACTCAAAACCGGCTGCTCCAGGTGCAGGTGCAGGTCCAGGTCCTAATGCTTG 1124 0.4573 MLCCGGAEEESGGLPPNQSTAPPRGGSTYGGGAGGDRGEPRSGQAVKGGGAPQQDLKIEIPAIPLDELNRLTDNFGSSALIGEGSYGRVFSAKLNDGQPVAIKKLDASSSQEPDSDFAAQLAVVSRLKHEHFVELIGYCLEENNRILVLEYATLGSLHDILHGRKGVQGAEPGPALNWNQRVKIAFGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFDDYLSKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAAPGAGAGPGPNA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02272 374 Gene3D Transferase(Phosphotransferase) domain 1 153 363 - -
Bva04g02272 374 PANTHER OS03G0226300 PROTEIN 1 365 - -
Bva04g02272 374 MobiDBLite consensus disorder prediction 1 53 - -
Bva04g02272 374 SMART tyrkin_6 75 353 IPR020635 GO:0004713|GO:0006468
Bva04g02272 374 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 365 - -
Bva04g02272 374 Gene3D Phosphorylase Kinase; domain 1 51 151 - -
Bva04g02272 374 ProSitePatterns Tyrosine protein kinases specific active-site signature. 203 215 IPR008266 GO:0004672|GO:0006468
Bva04g02272 374 Pfam Protein tyrosine and serine/threonine kinase 80 353 IPR001245 GO:0004672|GO:0006468
Bva04g02272 374 SUPERFAMILY Protein kinase-like (PK-like) 58 353 IPR011009 -
Bva04g02272 374 ProSiteProfiles Protein kinase domain profile. 75 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g02272 374 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02272 Bva-Chr4 21482737 21485825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02272 60 363 Receptor kinase-like Gene Family AT3G58690 45.574 2.13e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Bva04g02272 PK_Tyr_Ser-Thr 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02272 - - tcc:18599139 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02272 04 21482737 21485825 Bva13g02299 13 17609788 17613685 BWGD
Bva04g02272 04 21482737 21485825 Bva04g02272 04 21482737 21485825 ECH