Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02269 ATGGCTCCTGGTGGCAGTGCTTGCAAAGAAGTTCTCGAGTCTCACCTGACATTTTCAGATTATGATACAGTCAAGCCCAAATCTGAGACTAATAGTAATATTACTATTACAAAATCTAGTGCTATGTCGGGTGGAAAACATGGAAATAATTCAAAGAATGGTGTGAATGACTTACTCAAGTGCCCTATTTGCAATAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCACACATTATGTTCAGACTGTAAGGTCAGAGTGCATAACTCTTGTCCAACTTGTCGATATGATCTTGGAAATATAAGGTGTTTGGCTCTGGAAAAAGTAGCGGAATCATTAGACCTTCCCTGCAGATATCAGAATCTGGGTTGTCAGGATATATTTCCATACTACACCAAGCTTAAGCACGAGCAAAACTGTCGATTTCGTCCATATAATTGTCCCTATGCCGGATCTGAGTGCTCCGTGACGGGTGACATTCCAACTCTTGTTGCCCATCTTAAGGAGGATCACAAAGTTGACATGCACGAGGGGTCTACCTTCAACCATCGATATGTGAAATCAAATCCTCATGAAGTTGAAAACGCAACATGGATGCTAACTGTTTTCAATTGTTTCGGAAGACACTTCTGCTTGCACTTCGAGGCTTTCCAGTTTGGCATGGCTCAGGTTTACATGGCGTTTTTACGATTTATGGGTGATGACAATGAGGCAAAGAAATTCACCTACAGCTTGGAAGTTGGTGCAAATGGCCGGAAACTTATATGGCAAGGAATTCCAAGAAGCATTCGTGACAGTCATCGGAAAGTTCGTGACAGTCAAGATGGACTTATCATTCAGAGAAATCTAGCTCTTTACTTCTCTGGTGGAGATAGACAGGAGTTGAAATTAAGGATCACTGGTCGTATCTGGAAAGAAGATTG 929 0.4198 MAPGGSACKEVLESHLTFSDYDTVKPKSETNSNITITKSSAMSGGKHGNNSKNGVNDLLKCPICNNLMYPPIHQCPNGHTLCSDCKVRVHNSCPTCRYDLGNIRCLALEKVAESLDLPCRYQNLGCQDIFPYYTKLKHEQNCRFRPYNCPYAGSECSVTGDIPTLVAHLKEDHKVDMHEGSTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQFGMAQVYMAFLRFMGDDNEAKKFTYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWKED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02269 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 113 IPR013083 -
Bva04g02269 309 SUPERFAMILY TRAF domain-like 114 306 - -
Bva04g02269 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 169 IPR013083 -
Bva04g02269 309 CDD Sina 175 303 - -
Bva04g02269 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Bva04g02269 309 CDD RING-HC_SIAHs 59 97 - -
Bva04g02269 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Bva04g02269 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bva04g02269 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 308 - -
Bva04g02269 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 308 - -
Bva04g02269 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 302 IPR008974 GO:0005515
Bva04g02269 309 SUPERFAMILY RING/U-box 51 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02269 Bva-Chr4 21471924 21475708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02269 1 309 C3H Transcription Factor Family AT2G41980 80.583 0.0 524