Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02264 ATGGAGCTGGCATTGAGCTTGGGAGATGCATCAAAggctttctcttttcttgacAAACCCACAAAAAGGCCCAACAAAGATCCTCATCCTGGCTTCTGCATGGCTCTGGGGGGTGCTTTCAGTTCTCGGAAGCCCTCAGATGCCAAAATCGGGAACCATGGTTATAGAGAAGATCAAGGCCAAGATGAGACAAGGGCTTCTTCGGATCCACCCCTTCAGCTCGAGCTTCTTCCCTTCACTCTTGTTCCTCGAACGCACCCGTCTTCTGATCAGCTTCGGATTCCTTGGCTTTCTGATGCACGTAAACCCCACAACAATCTGACAGTGGGTTTTGAGCGCATTTCATCAGATCCAGGTCCGAGGGCGTTGGATATGAACCGTTTGCCTGCGGAGGCGGGAACACGGCCAGCGGAGGACGCCGACGATGGTGCTACTCTGTCGTCTCCTAACAGTGCTGTGTCATCGTTTCAAATGGATTTCTGCTTTAGGAATAATACTGGCAGAaacaagagagagaatgagGGGGAAACCGAGAGAACGAGTTCGAGAGCGAGCGATGATGAAGACAACGGTTCAACTCGGAAGAAACTCAGACTCTCCAAAGAGCAATCAGCTTTCCTCGAAGAAAGTTTCAAAGAACAGACAACACTCAATCCCAAGCAGAAACTTGCTCTTGCAAAGCAGTTAAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGGGCAagGACAAAGCTGAAGCAAACAGAGGTAGATTGTGAATATTTAAAGCGATGTTGCGAGACACTGACGGAAGAGAACAAGAGGATGCGGAAGGAACTGCAAGAACTAAGAGCATTAAAAGCGTCTCAGCCATTTTACATGCAGCTCCCAGCTACCACTCTCACCATGTGTCCCTCTTGCGAACGTGTCGCTACCAACTCTTCCTCCGGAGCCCCCACCGCCACCGCCACCAACAGTTCTCAAATCTCATCCCCGTTGTCTCTTAGCAGCACCAGAGTACTGCCGGCCAAAACTCATGATTA 1034 0.4807 MELALSLGDASKAFSFLDKPTKRPNKDPHPGFCMALGGAFSSRKPSDAKIGNHGYREDQGQDETRASSDPPLQLELLPFTLVPRTHPSSDQLRIPWLSDARKPHNNLTVGFERISSDPGPRALDMNRLPAEAGTRPAEDADDGATLSSPNSAVSSFQMDFCFRNNTGRNKRENEGETERTSSRASDDEDNGSTRKKLRLSKEQSAFLEESFKEQTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRMRKELQELRALKASQPFYMQLPATTLTMCPSCERVATNSSSGAPTATATNSSQISSPLSLSSTRVLPAKTHD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02264 344 Coils Coil 263 286 - -
Bva04g02264 344 CDD homeodomain 194 251 IPR001356 GO:0003677
Bva04g02264 344 SUPERFAMILY Homeodomain-like 185 251 IPR009057 -
Bva04g02264 344 MobiDBLite consensus disorder prediction 165 199 - -
Bva04g02264 344 MobiDBLite consensus disorder prediction 309 344 - -
Bva04g02264 344 MobiDBLite consensus disorder prediction 132 151 - -
Bva04g02264 344 Pfam Homeobox associated leucine zipper 250 284 IPR003106 GO:0006355|GO:0043565
Bva04g02264 344 MobiDBLite consensus disorder prediction 49 64 - -
Bva04g02264 344 ProSitePatterns 'Homeobox' domain signature. 225 248 IPR017970 GO:0000981|GO:0006355
Bva04g02264 344 Gene3D - 186 255 - -
Bva04g02264 344 Pfam Homeodomain 194 248 IPR001356 GO:0003677
Bva04g02264 344 ProSiteProfiles 'Homeobox' domain profile. 190 250 IPR001356 GO:0003677
Bva04g02264 344 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 326 - -
Bva04g02264 344 PANTHER - 2 326 - -
Bva04g02264 344 Pfam HD-ZIP protein N terminus 69 156 IPR006712 GO:0005634
Bva04g02264 344 MobiDBLite consensus disorder prediction 38 72 - -
Bva04g02264 344 SMART halz 250 293 IPR003106 GO:0006355|GO:0043565
Bva04g02264 344 MobiDBLite consensus disorder prediction 164 199 - -
Bva04g02264 344 SMART HOX_1 192 254 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02264 Bva-Chr4 21456343 21457852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02264 121 331 Homeobox Transcription Factor Family AT3G60390 57.965 4.44e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva04g02264 HD-ZIP_N 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02264 K09338 - qsu:112028347 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02264 04 21456343 21457852 Bva13g02305 13 17641592 17643251 BWGD
Bva04g02264 04 21456343 21457852 Bva04g02264 04 21456343 21457852 ECH