Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva04g02263 | ATGGAGGAAGCATCAGATGCAATGAACCTTGATTTGAATCTGGGTCCTGGTCCAGAGCCAGCTGCGAGCTCCATAACCAATGAACctgtgaacttggatgattggaTTGGTGAGCCTCTCCATAGAATTAACGAAGCTGTTAGGCTTAGGGCTCGACAAAGGTGGAGACGGCGGCATATCCCACCTGAAACTCGCAATATTTCGATGGagttaaatcaatttttggtCAACCCAGGTAACGGAGATGCATTACAGGCTGGTGAAGGTAGTGTTGCAGCTGAGCAAAGAACAGAGGAAGTGCCAAAAGCATGTGATATTAACAACGGTGTTACAGAAGATAAGACATCGGAGAAGAAGGATGATATTGAAAAGGGTAGCGGCAACGATGGGAGCTTCTTCGATTGTAATATTTGTTTAGACCTGGCCAGGGATCCTGTTGTCACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGATGGCTACATGTGCATTCAGATGCTAAGGAATGCCCAATTTGCAAGGGAGAAgtgacaattaaaaatataactccGATATATGGTCGAGGAAACAATGTTCCTGATCCAGAGGAAGACCCAACTCTTAAAATCCCTCTTAGGCCTAACGCAAGGCGTGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTCCCCGTGGAGGAGATGATTCGACGCATTGGAAGTAGACTCGATCTTACTAGGGATTTAGTTCAGCCTCACGAGACTGACGATGCACGTGAAACAGCAGAGAGAACTAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGAATAAGGAGAGAGCATAATCCTGGGCCACCCCCAGATGATTTAATGGATTTTGCACAAAACAGTGGTGCTAGCACTGAAGCAGGGGATATCCGCAGGGTTCAACCCTCTATGTTTCGAAGAGCACATTTGCATAGAGcaacattttcttctctttcaacaGCTCTGAATAATGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCCATCCTCTTGGTAGAAGCCAAGAACAGCCTCCACCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACAATGCTATAGAGATTGATTCCATGTTATCCTCTTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCTTCAAGAGCTGATGTGGATAGTGGAGATTCTCGTGCCCCAAGGCGGAGGCGGTTGAACTG | 1250 | 0.4312 | MEEASDAMNLDLNLGPGPEPAASSITNEPVNLDDWIGEPLHRINEAVRLRARQRWRRRHIPPETRNISMELNQFLVNPGNGDALQAGEGSVAAEQRTEEVPKACDINNGVTEDKTSEKKDDIEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPICKGEVTIKNITPIYGRGNNVPDPEEDPTLKIPLRPNARRVESLRQTIQRNAFPVEEMIRRIGSRLDLTRDLVQPHETDDARETAERTSSLLSRFLTSRGIRREHNPGPPPDDLMDFAQNSGASTEAGDIRRVQPSMFRRAHLHRATFSSLSTALNNAERLVEAYFRSHPLGRSQEQPPPVDDRDSFSSIAAVINSESQMDNAIEIDSMLSSLSTSSSRRRNDASRADVDSGDSRAPRRRRLN | 416 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva04g02263 | 416 | SUPERFAMILY | RING/U-box | 131 | 188 | - | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 385 | 416 | - | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 271 | 305 | - | - | |
Bva04g02263 | 416 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 12 | 407 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bva04g02263 | 416 | PANTHER | OS01G0830200 PROTEIN | 12 | 407 | - | - | |
Bva04g02263 | 416 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 176 | IPR001841 | - | |
Bva04g02263 | 416 | Pfam | Zinc finger, C3HC4 type (RING finger) | 135 | 175 | - | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 394 | 416 | - | - | |
Bva04g02263 | 416 | ProSitePatterns | Zinc finger RING-type signature. | 150 | 159 | IPR017907 | - | |
Bva04g02263 | 416 | SMART | ring_2 | 135 | 175 | IPR001841 | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
Bva04g02263 | 416 | CDD | RING-HC_AtRMA_like | 133 | 177 | - | - | |
Bva04g02263 | 416 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bva04g02263 | 416 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 232 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva04g02263 | Bva-Chr4 | 21447360 | 21449497 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva04g02263 | 2 | 407 | C3H Transcription Factor Family | AT3G58030 | 51.852 | 2.85e-128 | 375 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva04g02263 | K10666 | - | gmx:100811099 | 604.749 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva04g02263 | 04 | 21447360 | 21449497 | Bva04g02263 | 04 | 21447360 | 21449497 | ECH |