Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02263 ATGGAGGAAGCATCAGATGCAATGAACCTTGATTTGAATCTGGGTCCTGGTCCAGAGCCAGCTGCGAGCTCCATAACCAATGAACctgtgaacttggatgattggaTTGGTGAGCCTCTCCATAGAATTAACGAAGCTGTTAGGCTTAGGGCTCGACAAAGGTGGAGACGGCGGCATATCCCACCTGAAACTCGCAATATTTCGATGGagttaaatcaatttttggtCAACCCAGGTAACGGAGATGCATTACAGGCTGGTGAAGGTAGTGTTGCAGCTGAGCAAAGAACAGAGGAAGTGCCAAAAGCATGTGATATTAACAACGGTGTTACAGAAGATAAGACATCGGAGAAGAAGGATGATATTGAAAAGGGTAGCGGCAACGATGGGAGCTTCTTCGATTGTAATATTTGTTTAGACCTGGCCAGGGATCCTGTTGTCACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGATGGCTACATGTGCATTCAGATGCTAAGGAATGCCCAATTTGCAAGGGAGAAgtgacaattaaaaatataactccGATATATGGTCGAGGAAACAATGTTCCTGATCCAGAGGAAGACCCAACTCTTAAAATCCCTCTTAGGCCTAACGCAAGGCGTGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTCCCCGTGGAGGAGATGATTCGACGCATTGGAAGTAGACTCGATCTTACTAGGGATTTAGTTCAGCCTCACGAGACTGACGATGCACGTGAAACAGCAGAGAGAACTAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGAATAAGGAGAGAGCATAATCCTGGGCCACCCCCAGATGATTTAATGGATTTTGCACAAAACAGTGGTGCTAGCACTGAAGCAGGGGATATCCGCAGGGTTCAACCCTCTATGTTTCGAAGAGCACATTTGCATAGAGcaacattttcttctctttcaacaGCTCTGAATAATGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCCATCCTCTTGGTAGAAGCCAAGAACAGCCTCCACCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACAATGCTATAGAGATTGATTCCATGTTATCCTCTTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCTTCAAGAGCTGATGTGGATAGTGGAGATTCTCGTGCCCCAAGGCGGAGGCGGTTGAACTG 1250 0.4312 MEEASDAMNLDLNLGPGPEPAASSITNEPVNLDDWIGEPLHRINEAVRLRARQRWRRRHIPPETRNISMELNQFLVNPGNGDALQAGEGSVAAEQRTEEVPKACDINNGVTEDKTSEKKDDIEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPICKGEVTIKNITPIYGRGNNVPDPEEDPTLKIPLRPNARRVESLRQTIQRNAFPVEEMIRRIGSRLDLTRDLVQPHETDDARETAERTSSLLSRFLTSRGIRREHNPGPPPDDLMDFAQNSGASTEAGDIRRVQPSMFRRAHLHRATFSSLSTALNNAERLVEAYFRSHPLGRSQEQPPPVDDRDSFSSIAAVINSESQMDNAIEIDSMLSSLSTSSSRRRNDASRADVDSGDSRAPRRRRLN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02263 416 SUPERFAMILY RING/U-box 131 188 - -
Bva04g02263 416 MobiDBLite consensus disorder prediction 385 416 - -
Bva04g02263 416 MobiDBLite consensus disorder prediction 271 305 - -
Bva04g02263 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 407 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva04g02263 416 PANTHER OS01G0830200 PROTEIN 12 407 - -
Bva04g02263 416 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Bva04g02263 416 Pfam Zinc finger, C3HC4 type (RING finger) 135 175 - -
Bva04g02263 416 MobiDBLite consensus disorder prediction 111 125 - -
Bva04g02263 416 MobiDBLite consensus disorder prediction 394 416 - -
Bva04g02263 416 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Bva04g02263 416 SMART ring_2 135 175 IPR001841 -
Bva04g02263 416 MobiDBLite consensus disorder prediction 106 125 - -
Bva04g02263 416 CDD RING-HC_AtRMA_like 133 177 - -
Bva04g02263 416 MobiDBLite consensus disorder prediction 1 22 - -
Bva04g02263 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02263 Bva-Chr4 21447360 21449497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02263 2 407 C3H Transcription Factor Family AT3G58030 51.852 2.85e-128 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02263 K10666 - gmx:100811099 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02263 04 21447360 21449497 Bva04g02263 04 21447360 21449497 ECH