Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02253 ATGTTTTCGTGGTTGGCAAGGATGGTTTCTGCGTGTTTGAGACCGGTAAGGCGGTATGCCCGTATGAACAAGGATGATTTTGATAAATCTTCCACTGAAGACACTCTCCTCTGGTACAAGGACCTCGAGAAGCACTCTTGCGGCGAATTCTCTTTTGCGGTGGTTCAGGCCAATAAAGTTATTGAGGATCACAGCCAGGTGGAAACGGGCTCTGACGCCATATTCGTCGGTGTCTATGATGGCCATGGCGGTCCGGAAGCTTCCCGGTTCATCAGCGACCACCTCTTCCATCATCTAATGAGGATTGCTCGCGAAAATGGGACTATATCTGAAGATATCCTTAGGGGTGCTGTTTCTGCTACCGAGGATGGGTTTCTGACTCTAGTTCGAAGGACTTATGGCATAAAGCCATTGATGGCAGCAATTGGTTCATGTTGTCTGGTTGGTGTAATTTGGAAAGGGACCTTATATGTCGCCAATCTCGGAGACTCTCGTGCTGTAATTGGTTGTTTAGGTGGATCTAATAAGATCGTTGCTGAGCAGTTGACCAGAGAGCACAATGCAAACAAAGAGGAGGTTCGACTAGAATTAAGGTCGTTGCATCCAGAGGATTCTCAAATTGTAGTTATGAAGCAAGGAACGTGGCGCATTAAAGGAATCATCCAGGTATCCAGATCTATAGGTGATGCGTACTTAAAGAGACCAGAGTTTTCACTTGATCCTTCATTTCCACGGTTCCACTTGCCTGAACCTATCCGCAGGCCCGTGCTAACTGCTGAACCTTCCGTGTGTTCAAGAGTTTTGCAACCTAATGATAAATTCCTTATATTTGCATCTGATGGGCTTTGGGAACACCTCACGAATCAACAAGCTGTTGAGATTGTGCACAAGAATCCACGACATGGGATTGCAAGGAGACTTGTTAAAGCTGCTTTAAGTGAGGCAGCTGGGAAAAGGGAAATGAGATATAAAGATCTGCAGAAGCTTGAGAAGGGGATTAGGCGGTATTTTCACGATGATATCACAGTTGTTGTTGTCTTCATAGACCATGAGTTGCTTGCAAAGAATATCACCGTTCCACAGTTGTCCATCAGAGGGTTCATCGATACAGTTGAACCATCAAATTTCAAAGCTCTCCAGGGATTGATGTG 1151 0.4553 MFSWLARMVSACLRPVRRYARMNKDDFDKSSTEDTLLWYKDLEKHSCGEFSFAVVQANKVIEDHSQVETGSDAIFVGVYDGHGGPEASRFISDHLFHHLMRIARENGTISEDILRGAVSATEDGFLTLVRRTYGIKPLMAAIGSCCLVGVIWKGTLYVANLGDSRAVIGCLGGSNKIVAEQLTREHNANKEEVRLELRSLHPEDSQIVVMKQGTWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLPEPIRRPVLTAEPSVCSRVLQPNDKFLIFASDGLWEHLTNQQAVEIVHKNPRHGIARRLVKAALSEAAGKREMRYKDLQKLEKGIRRYFHDDITVVVVFIDHELLAKNITVPQLSIRGFIDTVEPSNFKALQGLM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02253 383 SUPERFAMILY PP2C-like 54 349 IPR036457 -
Bva04g02253 383 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Bva04g02253 383 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 368 - -
Bva04g02253 383 CDD PP2Cc 50 348 IPR001932 -
Bva04g02253 383 Gene3D - 20 357 IPR036457 -
Bva04g02253 383 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Bva04g02253 383 PANTHER ALPHABET, ISOFORM E-RELATED 6 368 - -
Bva04g02253 383 SMART PP2C_4 43 346 IPR001932 -
Bva04g02253 383 Pfam Protein phosphatase 2C 47 316 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02253 Bva-Chr4 21401613 21404930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02253 1 376 PP2C-type Phosphatase Gene Family AT5G06750 71.392 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02253 K01102 - gmx:100813740 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02253 04 21401613 21404930 Bva13g02317 13 17704006 17707124 BWGD
Bva04g02253 04 21401613 21404930 Bva04g02253 04 21401613 21404930 ECH