Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02246 ATGGATACGCGCAAGAGAGAGAGGCCTGATTCTGTCTTCAACGTTAATGGCGGCACCAAGAAGTCTAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACCGCTGGTTGCCCATTTGGTGAGGCCTGTCACTTCCTGCACTATGTACCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAGCGCCTGCTGTTCCTCCAGCATCTAGAAATATTGCTGCCCCACCACCAGTTCCTAATGGATCTACACCACCTACTGTTAAAACCCGCATGTGCAATAAGTATAATAGTTCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGCGAATGGGAACTTGGCAAGCCTCTTGCTTCATCAGTTGATGATCATCGTGCCATGGGACCCAGGCCAATTTCTGGCCGTCTACCCGGTCGAGTGGAGCCTCCTCCTGGTCCTGCTGGTAGTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCGTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTCAACTCCAAGCAGATATGTCGCCAAACAGGAGCCAAACTATCAATTCGGGAGCATGAATCAGATCCAAATCTTAGAAACATTGAACTTGAGGGAACTTTTGAACAGATTAAGGAAGCGAGTAACATGGTACAAGAGTTAATTTCAACTGTCTCAATGTCCGTCAATCCTAAAACACTCGGTGCTCCTGGTGCCCCAGCCTCTCGTGGAAGTAACTTTAAGACCAAGCTGTGTGAGAAGTTTGCGAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTCGCACATGGGGCTGCTGAATTGCGAAAATTAGGAGTATG 887 0.4769 MDTRKRERPDSVFNVNGGTKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEACHFLHYVPGGYNAVAQMMNLAPAVPPASRNIAAPPPVPNGSTPPTVKTRMCNKYNSSEGCKFGDKCHFAHGEWELGKPLASSVDDHRAMGPRPISGRLPGRVEPPPGPAGSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVQELISTVSMSVNPKTLGAPGAPASRGSNFKTKLCEKFAKGSCTFGERCHFAHGAAELRKLGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02246 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Bva04g02246 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 239 IPR036612 GO:0003723
Bva04g02246 295 Gene3D - 93 131 - -
Bva04g02246 295 Gene3D - 260 292 - -
Bva04g02246 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Bva04g02246 295 Pfam RNA-binding, Nab2-type zinc finger 112 125 - -
Bva04g02246 295 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Bva04g02246 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Bva04g02246 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Bva04g02246 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Bva04g02246 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Bva04g02246 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Bva04g02246 295 Pfam KH domain 172 235 IPR004088 GO:0003723
Bva04g02246 295 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Bva04g02246 295 SMART kh_6 168 238 IPR004087 GO:0003676
Bva04g02246 295 CDD KH-I 171 234 - -
Bva04g02246 295 Gene3D K Homology domain, type 1 165 259 IPR036612 GO:0003723
Bva04g02246 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Bva04g02246 295 MobiDBLite consensus disorder prediction 1 32 - -
Bva04g02246 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Bva04g02246 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Bva04g02246 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Bva04g02246 295 MobiDBLite consensus disorder prediction 15 32 - -
Bva04g02246 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02246 Bva-Chr4 21370633 21375955 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g02246 KH_1 1.9e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02246 - - gmx:100803981 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02246 04 21370633 21375955 Bva04g02246 04 21370633 21375955 ECH