Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02245 ATGGCTTCTAAAGGTCCAAGGTCTAAGTTAGATCACGAGTCAAGGGCTAAGCGGCAAAAGGCACTTGAAGCTCCAAGGGAGCCTCGGCGGCCCAAAACTCATTGGGATCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCTAAGAAAGTTGCTTTAAGAGCCAGCAAGGGCATGTTAGATCAGGCTACAAGAGgtgaaaagaagatgaagGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTCAAGAAATTCTggatgaaaatagaaaagctgGTTCTTTACAAGCATCAGTTGGTGcttgatgagaaaaagaaaaaggctcTTGATAAACAGCTTGAGTTTCTTTTGGGGCAAACTGAGAGGTACTCAACAATGTTAGCAGAAAATCTTGTGGATGGGTATAAATCAGTAGAGAGACATTCTGAAGATGCAGAGCATCGGAAGAGTATTCAATATAAAGGAATAGATGAAAACGTTGCTGGTGAATCTGAAGAAGTTAATGTTGCAGAGTCCCAGTCAGATGCTCCTGATAATGATGAAGAATATGATATCCAATCTGATGATGAATCAGAGGATGATGAACAAACCCTTGAGGTAGATGAGGCTCTTATAACCCAAGAGGAAAGACAGGAGGAATTGGCTGCCTTGCATGATGAAATCAATCTTCCGCTTGAGGAGTTGCTCAAACGTTATGCTGCAGGAAAAGAATCAGCTAGTCAAGAAAGTAATTCAGAACATGGTGATGATGGTGCACAAGCCATGGAAGATCATAGTCATGAAAATGGAGATGAACTATCCTCTATCAGCAAGATTGGCACAACCAACTCCGGCATGGTCCCTGGTCGTCGTTCTGATGGAAGTGGCCTTGCAACATCGGTGATGCAAGAGGAGACCAGTCAATCTAAGATTCCTGAAGAATTTTCCAGTGAGATGGCCGatgaaaattctgcatatGATTTTAGTGATGAAGAGGAAGACGGTGACTTCTTGCTTGCCACCAAAGACAATGAAGATGGTGACTTCTTGCTTGCCACAGAAGACAAGGATGATGAGACAACCTTATCTGAGGAGGAAAAATTGGAGAAAGCAGATGCAATTGATCCCAAGGATGAGATTGCATTATTGCAAGTGGAGAGTGACATGCCTATTGAGGAGCTCCTTGCGAAGTACAgaaagGAACCCTGTAATGACGAAGATGCGGAAGGTGAATCTGATTATGCTTCTGCTTTATCAGAGAACCTTTTGGATTCTCCTGAACTTGAGAATGCTAGACAGAAGGATCCTGCTGTTTGTATGGATGAATATGTCAAACCCAGTGATGATGTGGCTGCTGTACAGTCCCAGACAGAAGAACACTGGGAAGCTCCTCAGAAAAGTTCAGAGGGAAGGGAGAGTGAGAATATAATTGCTGATGCAGCTGCTGCTGCCAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACCAAAGTGCGTACAAAGTTCCCTTTTTTACTCAAGTACCCTCTTCGTGAGTATCAGCACATTGGATTGGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACAATAGCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGCCCACATCTCATTGTGGTACCAACAAGTGTCATGCTTAACTGGGAAACGGAATTTCTTAAATGGTGCCCTGCTTTTAAAATTCTGACTTATTTTGGAAGTGCGAAGGAGCGAAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTCTGCATAACGACTTATAGACTAGTGATTCAGGATTCCAAAGTTTTTAAGCGCAAGAAGTGGAAATACTTGATTTTAGATGAAGCTCATCTGATTAAAAATTGGAAATCTCAAAGATGGCAGACTCTCTTAAATTTCAGTTCAAAACGACGTATTCTTTTGACTGGTACACCACTGCAGAATGACCTCATGGAACTCTGGTCTCTCATGCATTTTTTGATGCCCCATGTTTTCCAATCTCATCAAGAGTTCAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAAGGAGaggaaaaagttaataaagaAGTTGTTGATCGTCTCCATAATGTCCTTCGTCCATTTATACTCCGTCGATTAAAGCAAGATGTGGAGAAGCAACTTCCTATGAAGCACGAGCATGTCATATACTGTAGACTGTCAAAGAGACAGCGGAATTTGTATGAAGACTTCATTGCTAGCTCAGACACACAGGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATTATGCAACTTCGCAAGGTCTGCAATCATCCTGATCTTTTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGGGGTATTGATATTCAATTAAGTTCTTCTGTATGTTCAGTGTTTTTACCTACCTCATTTTCAACTGTAGACCTGAGAGGTCTAGGTTTGTTATTCACTCATCTTGATTTTAGCATGACTTCTTGGGAGAGTGATGAAGTAAAAGCTATTGAGACTCcttcaagtttaattttagagCGTGCTAATGTGGATGACCTAGAAGTAATTAAGCCAAGATTGAAGCATGGGAAGAAGCTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATTTGGGAAGAGAGGCTAAGAGAAGTGAAGGAACGTGCTTCGGCAATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAGACCCATCTACTCAACAAGCGTAAGGGATCTTGTTACCATACGACATCCCATACATGACATTCATCGTGAGAAGGCAAACTCTGTTTCCTATTTGTACTCCTCTAAGCTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTCCAAAGTATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGAGCCCCACCTCCTATTTGCTGGTGTAGTAGAAATGGGATGCCAGTGTTTCTGCAGCAATCTTATAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTCTGTCACCATTCAGGCCAGCAATTGTCCGCCGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGTAAACTGCAGGAGCTTGCACTATTGCTGAGGAAATTAAAATCAGAAGGTCATCGAGCATTAATATTCACCCAGATGACAAAGATGCTAGACTTATTGGAGGCTTTCATTAATTTGTACGGCTATACTTACATGCGGTTAGACGGGTCAACTCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTCAACACAAACcccaaaatatttcttttcatcttgTCAACCCGCAGTGGGGGTGTTGGCATCAACCTAGTTGGAGCTGACacagttattttttatgatagtGACTGGAATCCAGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGGATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATTAGTGAATGcacaattgaagaaaatattttgaagaaagcCAACCAGAAACGTGCACTTGATGATCTAGTTATACAAAGTGGTGGCTATAATACTGAATTCTTCAAGAAGCTTGATCCTATGGAATTATTTTCTGGTCATAGAACACtgccaataaaaaatatgcagAAGGAGAAAATCCAGAATGATGCAGCTGAGGTTTCAGTTACTAATGCAGATTTAGAAGCTGCTTTGAAACATGTAGAAGATGAAGCAGACTATATGGCATTGAAGAGAGTTGAACAAGAAGAGGCTGTGGACAACCAGGAGTTTACTGAAGAAGTCATTGGGAGACTTGAAGATGATGAATATGGAAATGAGGATGACATGAAGGTTGATGAGCCAGAACATGGTGCATCAGTTTCTAATTTAAGTAAAGAGAATTTGCTAATGTTAAATGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTGTTGCTGGAAAAGAAGATGATGTTGATATGCTAGCTGATGTCAAACAGATGGCTGCTGCTGCAGTTGCAGGTGGACAAGATATTTCAGTCTTTGAGAATAAGCTACGTCCAATTGATCGTTATGCCATTCGTTTTCTGGAGCTGTGGGATCCTATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAATTAGATCGCATTGAGAGGTATAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATATCGACAACGAGTTGAAGCCTTGGCTCAACATCAGCTGATGGAGGAACTCGAATACAAGGCTAGAATGGAAGAAGAAGCCAATGAAGAAAATCATGATTCTAGAAAGAATGAAGCGCCAAGTGATTCTAGGcctaaaccaaaaaagaaacccAAGAAAACCAAGTTGAAGAAGGTAAGGTCTTTAGCTTCTGAATTGAAACCTGTGAAAGAAGAGCCACAAGCGGAGCCTATGTCTGTGGATGATGAAGTTGGCACTACCCTGGAGAAAAAGCGTAAGAAGTCTAAATTTATGGCAGATGgcaaaggagagaaaaaatctaagaaatcaaaaaagatCAAGAGTGCTCCTCCTGAAAATTGTACTTCGGATATAGATTCCAACTCACTAGGTATGTTAGATGACCATGCAGAATCAAGGCCGTGTGCAAGTCTGATTGATTTGGAACAGAAGCCTTCAAGCAGGAGTAAGATGGGGGGAAAAATATCAATCACCCCAATGCCAGTGAAACGAATACTGTTGATAAAACCAGAAAAGTTGAAGAAGGGAAACATTGGGTCTAAAGATTCTGTTCCATCTCCTGATTCTTGGTTGCCACAGGAAGATGCAATATTATGTGCGATCGTTCATGAATATGGTCCTAACTGGGGTTTGGTTAGTGAAACGCTTTATGGCATGACTGCTGGTGGAGCATACAGGGGGAGATATCGTCATCCTGTCCACTGCTGTGAGAGGTTCAGAGAACTAGTTCAAAAATATGTCATGTCCGTGACAGAAAATGCTAATCATGAGAAGATCAACAGCATTGGATCTGGAAAGGCTCTTCTCAAAGTTACGGAGGATAACATCCGGACATTGTTAGATGTTGTTTCTGAGCAGACAAATAGAGAACTACTACTGCAGAAGCATTTTTTCTCCCTGCTTTCATCTGTTTGGAAGGTTGAAGCGCATGTTCGCCTGAGGCAAAATCCTTCTCCTACTAGTAATGGTCTCTATTTTGGTCAGAGTTTCTTTACTTCCAATGGTCAACATTCTGAGAATGCTTTGAAGAAACCTTCTGAAAGGATGACATTCACAGCCCAGAGCAGGAAGTTAATAGTAGCTGCACTTGATGACAGTATAAGTAGGCAACAGGATGACAAAGTCTCCCCCTCTGGCCAGGATGAAGATATGGCAGTCTGTGCTGAGCAGATGGATATAACACTAGAGTTCCCAAGAGAGGATAATGACTCCATGGTTCCATTTCCATCTGTAATAAGTTTGTCAATACGTGAGCCAGAGCCATTACGATCTTTGGAGAAACATACAGGGGAAGATGATTGTCTTAAACGTTGCAGGTCTGTTGCTGAGAATCGTTTCAGGGAGGCAACAAGAGCTTGTGTGCAAGACTCTTCTGGATGGGCTTCATCTGTATTTCCAACAAACGAGAAGTCTCGAACAGGATCCAAGATTCAGTCATCGGGAAAGCATAAATCTTTCATTTCTGACTCCAATAAGCTTTCTAAATCAAAATCCCGAAGAACTTCAATGGATTGTAGTGAGATACGTCACCAACAGGCCGAGCAAATATTTCAGTCAGTTCAACCGCTTCAAGCCAATGATCTCAGATTTGATCTGAATGCCATGGATGAAGTTGGAGCTGATGACGTGAATAGCAATCTTCCTTTTGACTTGAATGCCGAACTTCCATCTGAAACGGAGAGTTTTGTAGTGGTCCCACATAATTATTCTCCTGGCTTAATCTCGGGCCTTGATGATTGTACGGTATTTCCTGAATATACTGATATTGGATA 6137 0.4023 MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQLVLDEKKKKALDKQLEFLLGQTERYSTMLAENLVDGYKSVERHSEDAEHRKSIQYKGIDENVAGESEEVNVAESQSDAPDNDEEYDIQSDDESEDDEQTLEVDEALITQEERQEELAALHDEINLPLEELLKRYAAGKESASQESNSEHGDDGAQAMEDHSHENGDELSSISKIGTTNSGMVPGRRSDGSGLATSVMQEETSQSKIPEEFSSEMADENSAYDFSDEEEDGDFLLATKDNEDGDFLLATEDKDDETTLSEEEKLEKADAIDPKDEIALLQVESDMPIEELLAKYRKEPCNDEDAEGESDYASALSENLLDSPELENARQKDPAVCMDEYVKPSDDVAAVQSQTEEHWEAPQKSSEGRESENIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFSSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSDTQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMWGIDIQLSSSVCSVFLPTSFSTVDLRGLGLLFTHLDFSMTSWESDEVKAIETPSSLILERANVDDLEVIKPRLKHGKKLQGTNIFEEIQRAIWEERLREVKERASAIAWWNSLRCKRRPIYSTSVRDLVTIRHPIHDIHREKANSVSYLYSSKLADIVLSPVERFQSMIDVVESFMFAIPAARAPPPICWCSRNGMPVFLQQSYKQKCSEVLSPLLSPFRPAIVRRQVYFPDRRLIQFDCGKLQELALLLRKLKSEGHRALIFTQMTKMLDLLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISECTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKNMQKEKIQNDAAEVSVTNADLEAALKHVEDEADYMALKRVEQEEAVDNQEFTEEVIGRLEDDEYGNEDDMKVDEPEHGASVSNLSKENLLMLNGSDPKEERPLSVAGKEDDVDMLADVKQMAAAAVAGGQDISVFENKLRPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYERWDADFATEAYRQRVEALAQHQLMEELEYKARMEEEANEENHDSRKNEAPSDSRPKPKKKPKKTKLKKVRSLASELKPVKEEPQAEPMSVDDEVGTTLEKKRKKSKFMADGKGEKKSKKSKKIKSAPPENCTSDIDSNSLGMLDDHAESRPCASLIDLEQKPSSRSKMGGKISITPMPVKRILLIKPEKLKKGNIGSKDSVPSPDSWLPQEDAILCAIVHEYGPNWGLVSETLYGMTAGGAYRGRYRHPVHCCERFRELVQKYVMSVTENANHEKINSIGSGKALLKVTEDNIRTLLDVVSEQTNRELLLQKHFFSLLSSVWKVEAHVRLRQNPSPTSNGLYFGQSFFTSNGQHSENALKKPSERMTFTAQSRKLIVAALDDSISRQQDDKVSPSGQDEDMAVCAEQMDITLEFPREDNDSMVPFPSVISLSIREPEPLRSLEKHTGEDDCLKRCRSVAENRFREATRACVQDSSGWASSVFPTNEKSRTGSKIQSSGKHKSFISDSNKLSKSKSRRTSMDCSEIRHQQAEQIFQSVQPLQANDLRFDLNAMDEVGADDVNSNLPFDLNAELPSETESFVVVPHNYSPGLISGLDDCTVFPEYTDIG 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02245 2045 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Bva04g02245 2045 Gene3D - 490 767 IPR038718 -
Bva04g02245 2045 Gene3D - 1641 1702 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1 33 - -
Bva04g02245 2045 SMART ultradead3 518 711 IPR014001 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1915 1942 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1472 1583 - -
Bva04g02245 2045 Gene3D - 768 844 - -
Bva04g02245 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1217 IPR001650 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 221 236 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1506 1554 - -
Bva04g02245 2045 Pfam Helicase conserved C-terminal domain 1067 1176 IPR001650 -
Bva04g02245 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 699 IPR014001 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 193 220 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 251 343 - -
Bva04g02245 2045 Pfam SNF2-related domain 539 811 IPR000330 GO:0005524|GO:0140658
Bva04g02245 2045 MobiDBLite consensus disorder prediction 307 325 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 463 484 - -
Bva04g02245 2045 SMART bromneu2 23 94 IPR014012 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 284 300 - -
Bva04g02245 2045 ProSiteProfiles Myb-like domain profile. 1644 1698 IPR001005 -
Bva04g02245 2045 Coils Coil 1243 1270 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1472 1493 - -
Bva04g02245 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 1247 IPR027417 -
Bva04g02245 2045 PANTHER HELICASE SRCAP-RELATED 3 1959 - -
Bva04g02245 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 744 IPR027417 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 267 283 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 1915 1955 - -
Bva04g02245 2045 CDD DEXQc_SRCAP 522 744 - -
Bva04g02245 2045 CDD SF2_C_SNF 1052 1187 - -
Bva04g02245 2045 SMART helicmild6 1093 1176 IPR001650 -
Bva04g02245 2045 Coils Coil 1407 1427 - -
Bva04g02245 2045 Gene3D - 1033 1282 IPR027417 -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 158 172 - -
Bva04g02245 2045 MobiDBLite consensus disorder prediction 158 236 - -
Bva04g02245 2045 PANTHER HELICASE SRCAP 3 1959 - -
Bva04g02245 2045 Pfam HSA domain 27 93 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02245 Bva-Chr4 21354513 21369960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02245 542 814 RAD5 or RAD16-like Gene Family AT5G43530 30.124 3.16e-29 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva04g02245 SNF2_N 1.6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02245 - - aprc:113871102 2990.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02245 04 21354513 21369960 Bva04g02245 04 21354513 21369960 ECH