Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02239 ATGGAGgatttgaaaaagagaaagctaGAGGAGGCTGGCAACGGTGACTTCTCTTCGAAGGAAGAGCTTCGTTTGCTTCTTGACCCGCTAGCAAAGCCCCAGCTCGTCGATCTTCTCGCGAAATTAGGGTCCCAATATCCTTCAATtgcagaagaaattaaaaacattgcGAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACATTGTGTGCTgCATTTCAAGAACATGGAGAGATTGAGGAAGGTGCTGTGATCTATGATAAAGCAACAGGAAGGTCCCGTGGATATGGTTTCATAACTTTCAAACATATGGAATCAACTCAACGTGCATTGAGAGCACCTGGCAAGTTAATTGAAggCAGAATGGCTGTCTGTAATCTAGCTTGTGAAGGCCTAACTGGTGCAAGTAGTACGCCAGATCTTTCCCTGAGGAAGCTGTACATTGGTAGTTTATCTCCAGAAGTCACAAGTGAAATGCTACTCCACTTTTTAGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCCTATGACAAAGATACAAATGAATCACGCGGTTTTGGCTTTGTTACGTACAAGACAGCAGAAGCTGCAAAGAAGGCTATAGATGATCCAGAAAAGACTCTTGGGGGGAGgaatataattgtaaaatatgcTGATTCCAACAAGAATAAAACTGGTCAGCCACCATTAACTGGAGGAATGATTCCAATGCCAGCCGTCCCTATGGCCCCTGGACATATGCAGCCTGGAAGATCTCATATCGGCACTCCTGTTGGCTACGCTTACCCTCAAACTGTTGCCCCATACCCTTCGGCTTCTTATGGTAGCCCTCCCACTGCACCTGCTCCTTATCCAGTGCAAGGGCCAGTTTCTTATCCCCCAGTTTCTGTCAAGAGAGACCCACTTGGGCTCCCACCAGCTCCATCTGTGGGAATGAGCAACTACCCGTATTACTATCCTAAGCAATA 1004 0.4402 MEDLKKRKLEEAGNGDFSSKEELRLLLDPLAKPQLVDLLAKLGSQYPSIAEEIKNIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKATGRSRGYGFITFKHMESTQRALRAPGKLIEGRMAVCNLACEGLTGASSTPDLSLRKLYIGSLSPEVTSEMLLHFLGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSNKNKTGQPPLTGGMIPMPAVPMAPGHMQPGRSHIGTPVGYAYPQTVAPYPSASYGSPPTAPAPYPVQGPVSYPPVSVKRDPLGLPPAPSVGMSNYPYYYPKQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02239 334 SMART rrm1_1 65 137 IPR000504 GO:0003723
Bva04g02239 334 SMART rrm1_1 156 228 IPR000504 GO:0003723
Bva04g02239 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Bva04g02239 334 Gene3D - 43 144 IPR012677 -
Bva04g02239 334 CDD RRM_RBM24_RBM38_like 64 139 - -
Bva04g02239 334 SUPERFAMILY RNA-binding domain, RBD 150 248 IPR035979 GO:0003676
Bva04g02239 334 Gene3D - 145 240 IPR012677 -
Bva04g02239 334 MobiDBLite consensus disorder prediction 286 302 - -
Bva04g02239 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Bva04g02239 334 SUPERFAMILY RNA-binding domain, RBD 52 141 IPR035979 GO:0003676
Bva04g02239 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Bva04g02239 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Bva04g02239 334 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 334 - -
Bva04g02239 334 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 334 - -
Bva04g02239 334 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02239 Bva-Chr4 21319632 21322564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02239 147 303 C2H2 Transcription Factor Family AT2G19380 28.313 3.05e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02239 K12741 - gmx:100776344 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02239 04 21319632 21322564 Bva04g02239 04 21319632 21322564 ECH