Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02238 ATGATCCACACACGAAAAATTAGGTTaccctttaattttaaatgggctatttctaatttttccgGCGATCAGCTTGGTTCATCAGAAAATTCCTTTCGGCCTGCACTGTTGTATGGCATTGCCCAAAACCCTATAACTTATGCAACAAAAAGAGCAGCGAAATCTTCCCACTGTGACGGTCGTGATGCGACTTTGACtgctaaaaaggaaaatgctcCGAAATTCTCGCCCACCACATTAAAAGAAGCTCAAGCTGCACTACTGGACTATCTGCATTATACTAGAGGCTTACAGTTCTTGGATGCAGATAATATGTCTAGAAACTCGCCATATTTTGTTGAGGAACTTCTGAAGAAAGTCAGAAATGGGGACATTAGGCGATCGATTACCCGGTATTTACGTTATCATCCTATCAATGAATTTGAACCTTTCTTCGAGAGCGTTGGTCTAAAACCTTCTGAATATATCTCTTTTCTTCCCCGTGATTTGATGTTTTTACGTGATGATCAACTATTGCTAGAGAACTATGAGACATTGTGTAACTATGGGATTCCTCGGAATAAGATAGGAAAGATTTATAAGGAAGCAACTCAAGTTTTTCACTATTGTCATGGTGTTTTATCATCAAAGCTCCAAGCCTACGAAGAACTGGGTCTTCGTAATTCTTCTTTGGTAAAAGTTGTTGCTTCTAGTCCATACGTTTTGATTGGTGATACCAACCTTGAAATCGTCAAGGTTCTAGAGAAATTGAAGCATTTTGGAAAGGATATTAATTGGGTTGAGGAACATATGTTGGATGGGACGTCTTATAATTGGGGTCAGATGCTTGAGGTGTTACGCTTGCTTAGCAAGTTTTCCAGTGAGGAGCAGTTGGGTGAAATGATCAAGCAGCAccctgattttctttttgaggatTCAGGAGGTAGGACATTCTCCCTGATTGGCTTTTTCTTAAAGCTTGGATTATCAAAAGACCAGATATCTCTCATATTTCTGAAGTTTCCCGAAATTCAATTTGGCAAGTTTCTTTGGAATTTGAGGCGCTGTTTTCTGTTCCTTAGTGATATCAAAATGGTGGGTGCAGAGATTGGAAAGATATTCCAGTCTCACTCGTTATTGTTGGGTTCATTCactttgaagaaaacaaatacttTAATTGCATCCTTAAACATTGGCAGAAAGCGACTTTGTAGGTTCATACGGGATAATCCACaagaattgaagaatttgGCTATTGGACGAAAATTGAAGCCTTTGCCAAAGGAAGAGGACGATGATATTAAATCACAAATGCAGAAGATGGAGTTCTTGTCGAGTTTGGGATACCAAGAGAACtcacaaaaattgaaatatgcaTTTAAGGTTTTCAGAGGTAAGGGAGCAGAGCTCCAAGAGAGATTCGATTGTATTGTTAATGCTGGCTTGGATTATGAGGATGCCTGCGAAATGATTAATATGGCTCCTCAGATTCTTAACCTGACCACGGATGTGAtcaacatgaaaataaattgtctCGTAAAAGAACTGGGATATCCCATATCATCTTTAGTGAATTTCCCAGCTTATCTTTCCTATACACCCCAAAGAGTAAAGCTTAGGGTGTCAATGTACAATTGGCTTAGAGATGAAGGGTGTGTAGATCCCAAGCTCGCATTGAGCACTTTAGTTGCTTCTACAGAAAAGACATTCATAAACCAGTATGTAAATCGTCATCCAACTGGTCCTCGAGTTTGGCaagatttgaagaaaaaaatatactctGAGAAAGTGAAAGAATG 1778 0.3611 MIHTRKIRLPFNFKWAISNFSGDQLGSSENSFRPALLYGIAQNPITYATKRAAKSSHCDGRDATLTAKKENAPKFSPTTLKEAQAALLDYLHYTRGLQFLDADNMSRNSPYFVEELLKKVRNGDIRRSITRYLRYHPINEFEPFFESVGLKPSEYISFLPRDLMFLRDDQLLLENYETLCNYGIPRNKIGKIYKEATQVFHYCHGVLSSKLQAYEELGLRNSSLVKVVASSPYVLIGDTNLEIVKVLEKLKHFGKDINWVEEHMLDGTSYNWGQMLEVLRLLSKFSSEEQLGEMIKQHPDFLFEDSGGRTFSLIGFFLKLGLSKDQISLIFLKFPEIQFGKFLWNLRRCFLFLSDIKMVGAEIGKIFQSHSLLLGSFTLKKTNTLIASLNIGRKRLCRFIRDNPQELKNLAIGRKLKPLPKEEDDDIKSQMQKMEFLSSLGYQENSQKLKYAFKVFRGKGAELQERFDCIVNAGLDYEDACEMINMAPQILNLTTDVINMKINCLVKELGYPISSLVNFPAYLSYTPQRVKLRVSMYNWLRDEGCVDPKLALSTLVASTEKTFINQYVNRHPTGPRVWQDLKKKIYSEKVKE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02238 592 Pfam mTERF 431 563 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 Pfam mTERF 287 443 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 PANTHER CGI-12 PROTEIN-RELATED 13 582 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 Gene3D Transcription termination factor 3, mitochondrial 312 583 IPR038538 -
Bva04g02238 592 SMART mt_12 513 546 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 SMART mt_12 190 220 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 SMART mt_12 481 512 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 SMART mt_12 225 256 IPR003690 GO:0003690|GO:0006355
Bva04g02238 592 PANTHER MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED 13 582 - -
Bva04g02238 592 Gene3D Transcription termination factor 3, mitochondrial 136 305 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02238 Bva-Chr4 21316292 21319036 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva04g02238 mTERF 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02238 - - qlo:115952342 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02238 04 21316292 21319036 Bva04g02238 04 21316292 21319036 ECH