Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02236 ATGGGTTCAAGCTCTGTGACCAAATCGGGAGCTGCTTTCTCCTGTACGCCCGAACCCTCCGTTGAGTCCCTCAATGGGTTGAAATTCGGGCAAAAAATCTACTTTGAGGATGTGGGTCTTGGAGCTCCGACCAAATCCAGTGGCGGGGCTTCGTCGTCCTCTGAGGCAACCCCGACAAAGAAGGGAAGGGGCGGCGCTTCTCAGGGCACACAGCCTCCTAGGTGTCAGGTTGAAGGCTGTGAAGCAGATCTGAGTGATGCTAAGGCTTACTATTCTAGGCATAAAGTCTGCGGCATGCACTCAAAATCCTCTAAGGTGATTGTTGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATTTGCTTCCTGAGTTTGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGCCGGAGAAAGCCTACACCAAACTCTTTATTGGCATCTCACTATGGCCGACTTTCTTCCTCTTTATTGGAAAACAGCAGCAGAGGTGGTAGCTTTCTAATGGAATTTGCTGCGTATCCAAAGCTTAATATGAGAAATACACTGCCAACTCCGAGATCATCTTTGCAGCTTCCTGGAAATCGAACCGCTGCACTTCCCTGGCAGGGCAATTTGGAGACGCCATCTGATATTTTCTTGCAAGGTGCAGTTGGCGGGACGGGCTTCACTGGTCCAAGAAATCCCCCAGGAGAAAGCTTTACGGGAATCACAGAATCAAGCTGTGCTCTCTCTCTTCTGTCAAATGAAACTTGGGGCCCCAGAAACAGAGCACCAAACCTTGGGGTGAACAACTTCATAAATGTCACCGGGACACCCATGTCACAATTTTCTGCATCTTCTCATGGCAGCACCATCCATCAACTTCCAAGTGCCTCGTGGTGTTTCAAGGGCATTGATGCTAGTGATTGTCCGGACGAGGTTGTCCCCCATCTTGGTCTGGGTCAAATTTCGCAGCCTCCAACTAGTCAACTTCCTAACGAGCTTGACTTCTCACAACAAGATAGGAGGCATTATATAGAACTTGATCAGTCCAGGGACTATGACTCTTCCCAGCATATGCATTGGTCACTTTA 1103 0.4914 MGSSSVTKSGAAFSCTPEPSVESLNGLKFGQKIYFEDVGLGAPTKSSGGASSSSEATPTKKGRGGASQGTQPPRCQVEGCEADLSDAKAYYSRHKVCGMHSKSSKVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPTPNSLLASHYGRLSSSLLENSSRGGSFLMEFAAYPKLNMRNTLPTPRSSLQLPGNRTAALPWQGNLETPSDIFLQGAVGGTGFTGPRNPPGESFTGITESSCALSLLSNETWGPRNRAPNLGVNNFINVTGTPMSQFSASSHGSTIHQLPSASWCFKGIDASDCPDEVVPHLGLGQISQPPTSQLPNELDFSQQDRRHYIELDQSRDYDSSQHMHWSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02236 367 MobiDBLite consensus disorder prediction 45 74 - -
Bva04g02236 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 367 - -
Bva04g02236 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 367 IPR044817 GO:0003677
Bva04g02236 367 Pfam SBP domain 75 148 IPR004333 GO:0003677
Bva04g02236 367 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Bva04g02236 367 MobiDBLite consensus disorder prediction 42 75 - -
Bva04g02236 367 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g02236 367 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Bva04g02236 367 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Bva04g02236 367 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02236 Bva-Chr4 21305820 21310281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02236 27 367 SBP-box Gene Family AT2G42200 46.448 8.72e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva04g02236 SBP 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02236 - - gmx:100780949 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02236 04 21305820 21310281 Bva13g02336 13 17800057 17803840 BWGD
Bva04g02236 04 21305820 21310281 Bva04g02236 04 21305820 21310281 ECH