Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02222 ATGGATTCAAATTCCCATCAGAATTATCAACCCCAACAACAACCCAATTCTGGGTTACTTCGGTTTCGCTCTGCCCCAAGTTCATTTCTCGCAAATTTCACAGAAGCTCTTGATTCTAGTGGAAATAAGGGCAATACGTGGGAGAATTCTGAATCCGAGAGATTAATTTCTAGATTCGTAAATTACAGTGAAAACAGCGATACCACGTCGCTAAGTTTCCAGGAATTGGAGGATAAACCTTCCAAAGCACGGAACGAAGCTTCATTGAACCTCATGAACTCTCACGCTCAGCAAGCCTATTCTGGGTTGCCTCCTCATTATCCGAGGCACAATTCTACTACGAGTTCCCCCATGGATAACTCCTTTGGGCTTGGGGTTTCAATGGGAATGGATCAGGAAACACAGTCCAAAAGCTTTGGTTCGCATCTTCTCAGGCAAAGCAGCTCCCCTGCTGGCCTTTTCTCTAACATTTCCTTTCAAAATGGGTATGGCATCATGAAAGATGTTGGGAACTATGGTGGGATGAATAGCAGTAATTGTGAACTTAGTCCAACTATGAACGGattgaagaatcaaattaGCTTCCCATCAAGAACTTCTTCCCTTGGAGTGTTGTCACAGATCTCAGAAATTGGGAGTGAGGACATTGGGCCAACTAGCCCTAATGATGGGAAGCTGGCTGCTACCAATGGTTTTGGCTCTGCGTTCTCGTATGGTTCTTGGAATAATACATCACATCTCTCAGAAAATCTCAGTGGCTTGAAACGAGACCAAAGTAATTGTGAAAAACTATTTTCTGATGCTCAGAACGGAGAGCTAGGAAATCGGGTTCATGTACTATCACATCACTTGAGTTTGCCAAAAACTTCAGCAGATATAGCTGCTATGGAGAAGTTCCTTCAATTCCCTGATGCTGTTCCTTGTAAAATCAGAGCGAAGAGGGGATGTGCTACTCATCCTCGAAGTATTGCAGAAAGGgTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAATTACAAGAACTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATAAAAGACCTTCAGAAACAATACaagATTATGAGCGAAAAACGGTCAAACTGCAAATGTATGAGCATGCAGAAGCcggataaaaatcaaattgtttg 1184 0.4172 MDSNSHQNYQPQQQPNSGLLRFRSAPSSFLANFTEALDSSGNKGNTWENSESERLISRFVNYSENSDTTSLSFQELEDKPSKARNEASLNLMNSHAQQAYSGLPPHYPRHNSTTSSPMDNSFGLGVSMGMDQETQSKSFGSHLLRQSSSPAGLFSNISFQNGYGIMKDVGNYGGMNSSNCELSPTMNGLKNQISFPSRTSSLGVLSQISEIGSEDIGPTSPNDGKLAATNGFGSAFSYGSWNNTSHLSENLSGLKRDQSNCEKLFSDAQNGELGNRVHVLSHHLSLPKTSADIAAMEKFLQFPDAVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYKIMSEKRSNCKCMSMQKPDKNQIV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02222 394 Gene3D - 317 391 IPR036638 GO:0046983
Bva04g02222 394 Pfam Helix-loop-helix DNA-binding domain 321 367 IPR011598 GO:0046983
Bva04g02222 394 SMART finulus 322 372 IPR011598 GO:0046983
Bva04g02222 394 MobiDBLite consensus disorder prediction 1 20 - -
Bva04g02222 394 PANTHER TRANSCRIPTION FACTOR BHLH130 11 386 - -
Bva04g02222 394 CDD bHLH_AtbHLH_like 321 374 IPR045239 -
Bva04g02222 394 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 386 - -
Bva04g02222 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 383 IPR036638 GO:0046983
Bva04g02222 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02222 Bva-Chr4 21230932 21233798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02222 1 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 51.436 1.76e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02222 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02222 - - jre:109020257 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02222 04 21230932 21233798 Bva13g02355 13 17900852 17903192 BWGD
Bva04g02222 04 21230932 21233798 Bva04g02222 04 21230932 21233798 ECH
Bva04g02222 04 21230932 21233798 Bva09g00066 09 307848 311021 ECH
Bva04g02222 04 21230932 21233798 Bva07g02568 07 20357037 20360210 ECH