Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02217 ATGGAGCAAACTGCAGGAGGTTTGGTTGGATCCAGTCCCACAGTTCGCGAGCAAGACGAGAACGCACTTGAATCCATTCAATTTAACGAAGAAATCCAAGGGCTCATAGCGCCAGCATCGGAAAACGCAAGCTCCTTCACTGCGCTTCTCGAACTCCCATCAACTCAAGCCATGGAGCTCCTTCACTTGCCGGACTGCGACGGAACCGCTGCTGCGGCAAGTGGCTCTGAAAAATCCAGTTGCCAAATCGACGATCAGAAACCCTATCTTTTTCACTCTTTCAATGGCAATTTAACCTTCCCTTCTAACACTTCTTTGATCGAACGCGCTGCTAAGTTCTCCGTCTTTGCCGGGGAGAACTCGACAACGGAGGTTGCAAGCTCAGTTTTCCCAAGCTCCAGAGCGAATTTGGATAAAGTGAAGAATGAACCCCCAGAAACTGACTCGAATCCAAGCTCACCACAGGGTTTAGTTTCTGATCCTGTGGTTGAGAACAAGAACCAGAGGACCATTAAGAGAAAAGAGCGAGAGAAGAAGGTTAAAGGGTCATCGAAGAAGAGTAAGAGCGTCGCCGACGAGTCCTCCGGAGATGCTGAGAAGCTTCCCTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACTGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGTATGAAGCTTTTACAGGAACTGGTCCCCGGCTGCAATAAGATATCAGGAACCGCATTGGTGCTGGATGAAATCATCAACCATGTGCAATCTCTACAACGTCAAGTGGAGGTCTTGTCAATGAAACTGGCAGCGGTTAATCCTAGAATTGATTTCAGCCTTGACAGCATATTGGCTACAGAAGGTGCATTTTTAATGGACAGTAATTTCCATAACATGGTTACGCCTCTAATGTTGCCGGAAATGTCAGACAATGGAAACAGACAGCAATATCAACAACAATGGCAATATGACGCATTCCACCAACCACTTTTGGGGAGGGAGGAAGACAACCACAATTTCATGACTTCAGAAAACTCGCTTTTGAGTTACGGTGATTCGTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTG 1121 0.4692 MEQTAGGLVGSSPTVREQDENALESIQFNEEIQGLIAPASENASSFTALLELPSTQAMELLHLPDCDGTAAAASGSEKSSCQIDDQKPYLFHSFNGNLTFPSNTSLIERAAKFSVFAGENSTTEVASSVFPSSRANLDKVKNEPPETDSNPSSPQGLVSDPVVENKNQRTIKRKEREKKVKGSSKKSKSVADESSGDAEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEVLSMKLAAVNPRIDFSLDSILATEGAFLMDSNFHNMVTPLMLPEMSDNGNRQQYQQQWQYDAFHQPLLGREEDNHNFMTSENSLLSYGDSSANSASLHSNQLKMEL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02217 373 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 373 IPR024097 GO:0006355
Bva04g02217 373 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Bva04g02217 373 Gene3D - 209 281 IPR036638 GO:0046983
Bva04g02217 373 MobiDBLite consensus disorder prediction 136 197 - -
Bva04g02217 373 Coils Coil 252 272 - -
Bva04g02217 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Bva04g02217 373 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g02217 373 MobiDBLite consensus disorder prediction 182 197 - -
Bva04g02217 373 CDD bHLH_AtBPE_like 202 287 - -
Bva04g02217 373 SMART finulus 218 268 IPR011598 GO:0046983
Bva04g02217 373 MobiDBLite consensus disorder prediction 146 165 - -
Bva04g02217 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Bva04g02217 373 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 21 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02217 Bva-Chr4 21205409 21209729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02217 22 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.684 6.30e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02217 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02217 - - gmx:100814124 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02217 04 21205409 21209729 Bva13g02360 13 17925164 17930051 BWGD
Bva04g02217 04 21205409 21209729 Bva04g02217 04 21205409 21209729 ECH