Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02212 ATGGAGTCTCATGATGAGACAGGATGCCAGGCTCCAGAGCGCCCAATCCTTTGCGTTAATAATTGTGGTTTCTTTGGAAGGGCAGCTGCCATGAATATGTGTTCCAAATGCTATAAGGATATGCTTTTGAAGCAGGAACAGGAGAAACTCGCAGCATCATCTGTTGAAAACTTTGTGAATGGCAACTCTAACAACGTTGGGAAAGAAGCTGTGACTGCAGTTGCCACGGATCTAGAAATTGCAACCGTGCAAATAAAGACGGTCCATGCAGAGATTTCTGGGGATTCATCCTCAAGTCAGAGTTCAGAGATAAAAGCCAAGACTGGTCCTAGCAGATGTGCCACTTGCCGGAAGCGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGAAACCACTTTTGTGCAATGCATCGCTACTCCGACAAACATAACTGCCCTTTTGATTATCGGACTGCTGGTCAGGATGCTATTGCTAAAGCGAACCCTGTTGTTAAGGCAGAAAAGCTTGACAAAATCTA 518 0.4537 MESHDETGCQAPERPILCVNNCGFFGRAAAMNMCSKCYKDMLLKQEQEKLAASSVENFVNGNSNNVGKEAVTAVATDLEIATVQIKTVHAEISGDSSSSQSSEIKAKTGPSRCATCRKRVGLTGFSCKCGNHFCAMHRYSDKHNCPFDYRTAGQDAIAKANPVVKAEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02212 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Bva04g02212 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Bva04g02212 172 Gene3D - 1 63 - -
Bva04g02212 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Bva04g02212 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Bva04g02212 172 SUPERFAMILY AN1-like Zinc finger 99 167 IPR035896 -
Bva04g02212 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Bva04g02212 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Bva04g02212 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 56 - -
Bva04g02212 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Bva04g02212 172 Gene3D - 88 168 IPR035896 -
Bva04g02212 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02212 Bva-Chr4 21183581 21185605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02212 5 172 C2H2 Transcription Factor Family AT3G52800 42.604 9.90e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02212 - - gmx:100499995 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02212 04 21183581 21185605 Bva04g02212 04 21183581 21185605 ECH
Bva04g02212 04 21183581 21185605 Bva09g00073 09 348872 351576 ECH
Bva04g02212 04 21183581 21185605 Bva07g02564 07 20332662 20336245 ECH