Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02208 ATGGCTGACCCTTACTCCAATTTCTTCTCAGGTTTCTTCCAATTCAATCCCATCCACCATTATCCACTTCCTTCACCTCCTAACCCTTCTTcttctcatcatcatcatcaacacCATCCCTATCATGTTCACAACTTCatcaacagcagcagcagcagcagctttTTCCATTACCAGCAGCAAAACCTTTCATCAGTTTCACCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCCCTTCCCCTCTTGAGCCTCACCCCAACAAagcaagatgatgatgatcttCTTCTTCAGGAGCAAGTACAAGAGGTGGAGCTCCTCCACTCTTGCACTGACATGGATGTGGATCAAGGGGTTCTTAGACTTCACAGTGATAAacccaaagaagaagaagttgaagatgataatgatgatgatgacacTAGTGTTACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCCTCTGTgctctcttcttcctctgagATCACTGATAAAGAGCAAGCTGCAGATGCTAGCACTGAGGATTCTGGGTTCATGCTTAGCAGGATCAACAAGGGCCAGTATTGGATCCCGACTCCTTCTCAGATACTCATCGGCCCAACACAGTTCTCTTGCCCTGTTTGCTGCAAAACCTTCAATAGATACAATAACATGCAGaTGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCCACAGGGATGCTGAGGCTTCCATGCTATTGCTGTGCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCCCTCAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGAATTAAGCCCTTCATGTGCAGAAAATGTGGTAAGGCTTTTGCGGTGAGAGGGGATTGGAGAACCCATGAAAAGAATTGTGGAAAGCTCTGGTATTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATATAAAAGCTTTTGGGAGCGGCCATGCAGCTTATGGGATTGATGgctttgaagaagaagaagagccaGCATCCGAAGTAGAGCAAGATAATGATGAGTCCACTCAGTA 1115 0.4045 MADPYSNFFSGFFQFNPIHHYPLPSPPNPSSSHHHHQHHPYHVHNFINSSSSSSFFHYQQQNLSSVSPSPPSPPLREALPLLSLTPTKQDDDDLLLQEQVQEVELLHSCTDMDVDQGVLRLHSDKPKEEEVEDDNDDDDTSVTVALHIGLPSPSAAEMASVLSSSSEITDKEQAADASTEDSGFMLSRINKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNDESTQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02208 371 PANTHER ZINC FINGER PROTEIN WIP2 1 370 IPR043584 GO:0003700|GO:0010468
Bva04g02208 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Bva04g02208 371 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Bva04g02208 371 Gene3D Classic Zinc Finger 271 347 - -
Bva04g02208 371 Gene3D Classic Zinc Finger 208 231 - -
Bva04g02208 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 313 IPR013087 -
Bva04g02208 371 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 370 - -
Bva04g02208 371 SUPERFAMILY beta-beta-alpha zinc fingers 275 313 IPR036236 -
Bva04g02208 371 SMART c2h2final6 293 313 IPR013087 -
Bva04g02208 371 SMART c2h2final6 209 231 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02208 Bva-Chr4 21152037 21154743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02208 1 371 C2H2 Transcription Factor Family AT3G57670 62.315 4.32e-151 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02208 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02208 - - gmx:100802907 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02208 04 21152037 21154743 Bva13g02372 13 17993700 17996164 BWGD
Bva04g02208 04 21152037 21154743 Bva04g02208 04 21152037 21154743 ECH
Bva04g02208 04 21152037 21154743 Bva09g00076 09 361914 364290 ECH