Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02204 ATGGAGCGCGGGAAGAGCAAGAAGAGCGCCTCGGGTCTCTCTTTGCAACAATTCATCTCAATTACGAGTCCTCTTCTTGATTTGGAAAAGGAAGCTGAAATATCAGCCTCTATTACCTCAGGCGCGTCAAGAAATTTGGATACTGCTCAAAAGAAGGGCTCCATCATCGTCAATTTGAAGTGTGTAGATGTCCAGACAGGACTTATGGGCAAATCTCTAATCGAGTTTCAATCTACCAAAGGAGATGTTCTTCCGGCACATAAGTTTAGTACTCATGATGTTGTTGTTTTAAAACTCAATAAGGCTGATATAGGCTCCCCCGCTCTAGGACAAGGTGTTGTTTACCGGTTAAAGGATTCTTCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGGTTAAATAGTCCCCTGCGGCTAGAGAAAGTGGCAAATGAGGTAACATATAACAGGATGAAGGATGCGTTAGTACAATTGAGTAAAGGAGTGATAAAGGGTCCTGCTGCAGATCTCATTCCTATCTTGTTCGGAGAGAGGCCGCCAACAGTGTCCAAGAAGGATGTCTCTTTCACTTCTTTTAACCCCAACCTTGATCACTCTCAGAGAGATGCAGTTTCAAAGGCCTTGTCATCAAAGAATGTATTTTTGCTACATGGGCCTCCTGGAACAGGAAAAACTACCACAGTAGTAGAGATTATACTACAAGAAGTGAAGCGTGGATCAAAGATACTTGCTTGTGCAGCCTCAAACATTGCTGTTGACAACATTGTTGAGCGTCTGGCTACACACAGAATTAAGCTGGTGAGACTGGGTCATCCTGCGCGTTTATTGCCTCAAGTACTTGACTGCGCACTGGATGCTCAGGTTCTACGAGGAGATAATAGTGGTCTTGCCAATGATATCCGGAAGGAAATGAAGGCATTAAATGGAAAGTTACTGAAAACCAAGGACAGAAACACAAGGAGGGACATCCGGAAGGAACTCAGGGCTCTGTCCAAAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTGACAGATGTAATTAAAAGTGCAGATGTGGTATTAACAACTTTAATTGGTGCATTTGCTAAGAAGCTGGATAACACGACATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTAGAGATAGCATGCTGGATACCTCTGTTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAGCTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTGGGAAGAACCCTTTTTGAGCGACTTGCAGAAATGTATGGAAATGAAGTAACAGCTATGCTTACTGTTCAGTACCGCATGCATGAACTTATCATGGATTGGTCATCTAAAGAGCTTTACAACAGCAAGATCAAAGCTCACCCAAGTGTTGCTGCACATTTGCTTTCTGATCTTGAGGATGTGAAGAGGACCCCTTCGACTGAACCAACCCTTCTTCTCATAGACATTGCTGGATGTGacatggaagaaaagaaagatgaagagGATAGCACTCTAAATGAAGGAGAAGCTGAAGTTGCCATTGCCCATGCGAAGAGACTTGTGCAAAGTGGTGTGCTGCCTTCTGGTATTGGAATAATCACTCCATATGCTGCACAGGTGGTTTTATTGAAGATGTTGAAAAACAATGAGGACTGCCTAAAGGATATTGAAGTTTCGACTGTAGATGGCTTCCAGGGAAGAGAGAAGGAAGCCATTATTATATCAATGGTTAGATCCAATTCAAAAAAAGAGGTGGGCTTTCTGAGTGATCGTCGGCGGATGAATGTGGCAGTGACACGGGCAAGAAGGCAATGCTGTCTTATCTGTGACACAGAGACAGTCAGTAGTGATGGATTCCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAGTATCTGAGTGCATCTGAATATCAAAACGAATA 1943 0.4272 MERGKSKKSASGLSLQQFISITSPLLDLEKEAEISASITSGASRNLDTAQKKGSIIVNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADIGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYNRMKDALVQLSKGVIKGPAADLIPILFGERPPTVSKKDVSFTSFNPNLDHSQRDAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLATHRIKLVRLGHPARLLPQVLDCALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRRDIRKELRALSKEERKRQQLAVTDVIKSADVVLTTLIGAFAKKLDNTTFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGNEVTAMLTVQYRMHELIMDWSSKELYNSKIKAHPSVAAHLLSDLEDVKRTPSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIAHAKRLVQSGVLPSGIGIITPYAAQVVLLKMLKNNEDCLKDIEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLICDTETVSSDGFLKRLIEYFEEHGEYLSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02204 647 CDD DEXXQc_SMUBP2 196 444 - -
Bva04g02204 647 PANTHER HELICASE WITH ZINC FINGER 2 9 645 - -
Bva04g02204 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Bva04g02204 647 Pfam AAA domain 420 616 IPR041679 -
Bva04g02204 647 SMART AAA_5 211 463 IPR003593 -
Bva04g02204 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 9 645 - -
Bva04g02204 647 Coils Coil 298 318 - -
Bva04g02204 647 Gene3D - 443 647 IPR027417 -
Bva04g02204 647 TIGRFAM TIGR00376: putative DNA helicase 345 640 IPR004483 GO:0003677|GO:0005524
Bva04g02204 647 SMART ultradead3 193 444 IPR014001 -
Bva04g02204 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 633 IPR027417 -
Bva04g02204 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Bva04g02204 647 Gene3D - 41 143 - -
Bva04g02204 647 Gene3D - 24 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02204 Bva-Chr4 21121695 21127455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02204 138 380 Core DNA Replication Machinery Family AT1G08840 26.423 1.09e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02204 K19036 - gmx:100810545 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02204 04 21121695 21127455 Bva04g02204 04 21121695 21127455 ECH