Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02197 ATGAAACTGAATGGGGCACAACATTCAGAACCGgctaaaagtagaaaaaacaTATCTGCATCCTGTTCTCAAGCTTGGTGGCATGGCATAAGGCAGGAGGCCTTCTCTAGAGATATGATTGGGGAAGACAAAACAATTTCATTTGTACCAAAATCTGTGGATGGAAGTTTTGGAACCCAATCCAGCAAATTACAGGCTAAGGCTGAGCTAGATGAAGAGAAGGGCACCAAAGGAAAAGATAGAGAAACAGTTGAAAAACATCAACAAAAGCAACCAGTTATCCCTAGTATGCCTCCAACAGTAAATGAATTTCTAGCGCCACCTTCACGGTTGGAGCTTGTTGGCCACTCTATGTCTATGGCATGTACATCTTACCCATACTCAGATCCATGTTATGGATATGGAGGAGCAGTCCCCACTCATGGAGCTCATTCTTTGGTACCTCCTCATAGTCTAGGATTACATACCACCCAAATGGTCGTACCACTGGAAATGGCAGAAGAACCTGTTTATGTCAATGCCAAGCAATACCGTGGCATTTTGAGGCGTAGGCTATTGCGTGCTAAGGCTGAATTGAACAATAAGCTGACAAGAGTGAGGAAGCCTTACCTTCATGAATCTCGGCATTTGCATGCTATGAGAAGAGCAAGAGGCAGTGGAGGCCGTTTTGTGACCGCAAAGAAGTTTGATGACAGTGCTGCAAACACTGCAACCAACAAGGAAGCTGTTAGTTCTGACAACAAAACCGTGTCTTCGGACTCCAGTGGCATTGCTAGTTCAACCTCCAGGTCTCACCTGCAGGAAATGCATCAATCAGTGATGAACAGGTCCGACAGAGACAAGCACTGCTACTCACAAATTCAGGGCTTTGAGTTGTCTGGTTATTA 887 0.4431 MKLNGAQHSEPAKSRKNISASCSQAWWHGIRQEAFSRDMIGEDKTISFVPKSVDGSFGTQSSKLQAKAELDEEKGTKGKDRETVEKHQQKQPVIPSMPPTVNEFLAPPSRLELVGHSMSMACTSYPYSDPCYGYGGAVPTHGAHSLVPPHSLGLHTTQMVVPLEMAEEPVYVNAKQYRGILRRRLLRAKAELNNKLTRVRKPYLHESRHLHAMRRARGSGGRFVTAKKFDDSAANTATNKEAVSSDNKTVSSDSSGIASSTSRSHLQEMHQSVMNRSDRDKHCYSQIQGFELSGY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02197 295 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Bva04g02197 295 MobiDBLite consensus disorder prediction 58 100 - -
Bva04g02197 295 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Bva04g02197 295 MobiDBLite consensus disorder prediction 237 280 - -
Bva04g02197 295 MobiDBLite consensus disorder prediction 66 88 - -
Bva04g02197 295 Gene3D - 166 227 - -
Bva04g02197 295 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 54 280 - -
Bva04g02197 295 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Bva04g02197 295 MobiDBLite consensus disorder prediction 237 271 - -
Bva04g02197 295 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Bva04g02197 295 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Bva04g02197 295 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Bva04g02197 295 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 54 280 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02197 Bva-Chr4 21089680 21094045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02197 75 261 CCAAT-HAP2 Transcription Factor Family AT5G12840 44.560 7.39e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva04g02197 CBFB_NFYA 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02197 K08064 - tcc:18598988 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02197 04 21089680 21094045 Bva04g02197 04 21089680 21094045 ECH