Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02184 ATGGGAACTCCGGAATTTCCAGATTTGGGGAAGCATTGCTCTCTTGAGGATTGCAAACAGATTGATTTCCTGCCATTCACATGCGATCGCTGTAATAAGGTGTTTTGTTTGGAGCACCGAAGCTATACTAAACATAATTGTCCCAAAGCTGACAGAAATGATGTCACTGTTGTCATATGTCCACTTTGTGCAAAGGGAGTTCGCCTAATTCCTGATCAAGATGCAAACATTACTTGGGAAAATCATGTTAATACTGACTGTGATCCATCAAATTATGAGAgagtcaaaaagaagaaaaaatgccCTGCCCCTGGATGCAGAGAGATCCTTGTATTTTCAAACACAATCAAGTGTAGGGACTGCACGGTAGATCATTGTTTGAAGCATCGGTTTGGACCTGATCACAAATGTCCCGGACCAAAGAAGTCGGAAAcaactttttcatttatgagTTTTATGAATGGGAGTACAAAACAGGAATCGATGCCAAATCCAGCTTCAACCACATCTTCATCTGGATGGACTATAAGCTTTCTTAACGTGGCTTCAAATATTCTAGCTTGGCAGATTAGGGACGGGGTGGGACAGAATAGTGGCTGTACAAATGGAACTGGTCAAGTGGAGAAATGCCCTCAGTGCGGTGCAAAGTTTTCCTCGGCCACTACTTTGGCGGATCATGTGCAGAAAGTTCATGAAAGGAGTGGCAACCTATCTGGGGCGAAGAAGGTAAAAGTTGATGCCTGTCCTAAGTGTAGTAAAGGATTTGTAGATCCGATGGCTCTCGTGGAGCATATTGAGAGGGATCACGGTGGTTATTCAAGAGCATA 827 0.416 MGTPEFPDLGKHCSLEDCKQIDFLPFTCDRCNKVFCLEHRSYTKHNCPKADRNDVTVVICPLCAKGVRLIPDQDANITWENHVNTDCDPSNYERVKKKKKCPAPGCREILVFSNTIKCRDCTVDHCLKHRFGPDHKCPGPKKSETTFSFMSFMNGSTKQESMPNPASTTSSSGWTISFLNVASNILAWQIRDGVGQNSGCTNGTGQVEKCPQCGAKFSSATTLADHVQKVHERSGNLSGAKKVKVDACPKCSKGFVDPMALVEHIERDHGGYSRA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02184 275 SUPERFAMILY beta-beta-alpha zinc fingers 209 265 IPR036236 -
Bva04g02184 275 Pfam C2H2-type zinc finger 209 231 - -
Bva04g02184 275 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Bva04g02184 275 Pfam Zinc finger, C2H2 type 248 269 IPR013087 -
Bva04g02184 275 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Bva04g02184 275 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Bva04g02184 275 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Bva04g02184 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 274 IPR013087 -
Bva04g02184 275 Gene3D - 86 152 IPR035896 -
Bva04g02184 275 Gene3D - 2 58 IPR035896 -
Bva04g02184 275 Gene3D Classic Zinc Finger 207 275 - -
Bva04g02184 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 236 IPR013087 -
Bva04g02184 275 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 275 - -
Bva04g02184 275 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Bva04g02184 275 SMART c2h2final6 208 231 IPR013087 -
Bva04g02184 275 SMART c2h2final6 246 269 IPR013087 -
Bva04g02184 275 ProSitePatterns Zinc finger C2H2 type domain signature. 248 269 IPR013087 -
Bva04g02184 275 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Bva04g02184 275 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Bva04g02184 275 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Bva04g02184 275 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 275 - -
Bva04g02184 275 SUPERFAMILY AN1-like Zinc finger 4 58 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02184 Bva-Chr4 21018208 21018960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02184 1 275 C2H2 Transcription Factor Family AT2G41835 60.915 1.42e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02184 zf-AN1 6.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02184 - - mnt:21400983 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02184 04 21018208 21018960 Bva13g02399 13 18144536 18147072 BWGD
Bva04g02184 04 21018208 21018960 Bva04g02184 04 21018208 21018960 ECH