Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02172 ATGGCTTCATCTTCCTCCGGTCCTGACAAGTCCGAAGTTGGTTGTGGCAGTAGTGGCGGTGGCAGCGGGGGCGGTGGTGGTGCCGAGACTTCGGAAGCAGCGGTGGCCAGCGATCAACTATTACTATACAGGGGAttgaagaaagcaaagaaagagagagggtgTACAGCCAAAGAGCGCATCAGCAAAATGCCTCCTTGTACTGCTGGGAAACGCAGCTCAATTTATCGAGGTGTCACTAGACATAGATGGACTGGTCGTTATGAAGCACACCTTTGGGATAAAAGTACGTGGAACCagaatcaaaacaagaaaggaaagcaAGTTTACTTAGGGGCATATGATGACGAGGAGGCTGCAGCTAGAGCATACGACCTTGCTGCTCTGAAATACTGGGGACCAGGGACTCTCATTAATTTTCCTGTGACTGATTATGCGAGAGATCTTGAAGAAATGCAGAATCTTTCAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGGTTTTCAAGAGGAATCTCAAAATATCGTGGACTCTCCAGTAGTCGGTGGGAGTCATCATATGGTCGTGTGGGTGGATCTGAATACTTTAATAGCATACATTATGCTACAGGAGATGATTCAGCAGCAGAAAGTGGATATGTGAGTGGTTTCTGTGTAGAAAGAAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGATCCAATAAAACTTGCCAGCCTGATGTTGGAACAAAATCGtcagaaggaaaaaaacatGGTTTTTCTGGAGATATATACAATGAACTCAAAACATTGGAAGAGGAAGTACAACCTACAGAGCCATACCAAATGCCACAGTTAGGCATACTACATGACgggaaaaaacataaaagttcCTCAGTCTCTGCCTTAAGCATCTTATCCCGATCAGCCGCCTACAAGAGTTTGCAAGAGAACGTATTGAAGAGACAGGAAAATAACACAGATAATGATgagaatgaaaacaaaagtaCCATCAACAAGTTGGATTACGGCAAGGCTATTCAGAAGTCATCAAATCATGATAGAAGCAGTGAAAGACTTGAGGTTGCAATTGGAACGAGTGGGGCTTTGTCTCTTCAAAGAAATGTTCATCCATTAGCTCCATTCTTGTCTGCACCACTTTTGACAGCTTATAATACTGTTGATCCCTTAGTAGATTCTGTTCTCTGGACACCTCTTGTTCCTATGCTTCCTGCCAGCCTTTCTCGTACAGCTGAGGTTACAAAGACGGAGACAAGCTCAACTTATACTTTCGGCCAGATGAGTGAGTG 1301 0.4128 MASSSSGPDKSEVGCGSSGGGSGGGGGAETSEAAVASDQLLLYRGLKKAKKERGCTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQNLSREEYLASLRRKSSGFSRGISKYRGLSSSRWESSYGRVGGSEYFNSIHYATGDDSAAESGYVSGFCVERKIDLTSYIKWWGSNKTCQPDVGTKSSEGKKHGFSGDIYNELKTLEEEVQPTEPYQMPQLGILHDGKKHKSSSVSALSILSRSAAYKSLQENVLKRQENNTDNDENENKSTINKLDYGKAIQKSSNHDRSSERLEVAIGTSGALSLQRNVHPLAPFLSAPLLTAYNTVDPLVDSVLWTPLVPMLPASLSRTAEVTKTETSSTYTFGQMSE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02172 433 SMART rav1_2 75 147 IPR001471 GO:0003700|GO:0006355
Bva04g02172 433 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Bva04g02172 433 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Bva04g02172 433 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 429 - -
Bva04g02172 433 PANTHER BNAA03G19580D PROTEIN 21 429 - -
Bva04g02172 433 MobiDBLite consensus disorder prediction 319 356 - -
Bva04g02172 433 MobiDBLite consensus disorder prediction 1 31 - -
Bva04g02172 433 Coils Coil 317 337 - -
Bva04g02172 433 Gene3D AP2/ERF domain 75 143 IPR036955 GO:0003700|GO:0006355
Bva04g02172 433 SUPERFAMILY DNA-binding domain 74 142 IPR016177 GO:0003677
Bva04g02172 433 Pfam AP2 domain 75 133 IPR001471 GO:0003700|GO:0006355
Bva04g02172 433 ProSiteProfiles AP2/ERF domain profile. 75 141 IPR001471 GO:0003700|GO:0006355
Bva04g02172 433 MobiDBLite consensus disorder prediction 320 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02172 Bva-Chr4 20938745 20942729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02172 34 432 AP2-EREBP Transcription Factor Family AT2G41710 63.789 4.23e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g02172 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02172 K09285 - gmx:100814117 639.032