Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02171 ATGGAAGGTGGTGGGAACGATAAGGGGTTATTAATGGAGTATGTGAAGAAGTCGACGCCGTCACCTTTCTTGATGAAGACGAACATGATGGTGGAGGATCCGGCCACCGACCACGTGATATCGTGGAACGCCGATGGCACGGCGTTTGTGGTGTGGCAGACGGCGGATTTTGCTCGTGATCTCCTTCCAACACTCTTCAAGCACAGCAACTTCTCCAGCTTCGTGCGGCAGCTCAATACCTACggTTTTCGTAAAGTTGCAAGCAGTAGATGGGAGTTTTCCAACGAGCGATTTAGAAAGGGTGAGAAAGAGCTGCTATGTGAGATTCGACGAAGAAAAGCTTGCTCCACCAAGCAGCAACAACTCAATAATGCACCAAGAATCCAAGCCACACCTCAAGAATCAGGTGAAGATCAAAGGTCTTCATCCAATACGTCGTCGTCTTCGGGTTACACTAGTCTTGTGGATGAAAACAAGAGACTGAAGAAAGAGAATGGAGTGCTCAGCTCTGAGCTCACTGTCATGAAAAGGAAATGCAAGGAGCTGCTTAATTTGATAGCCAAACATGCACAATATCCAAAGAAAGAGGATAagcaagaagaagatgatcaGAGGCCAATGTTGTTTGGAGTGAGACTTGAAgttgaaggagaaagagaCATCAAGAGGCAGAAGAGAGCTGAGATTGCTGAAACTGCAACCATTTTGCTTTCTCAGTCatgcaaata 728 0.4382 MEGGGNDKGLLMEYVKKSTPSPFLMKTNMMVEDPATDHVISWNADGTAFVVWQTADFARDLLPTLFKHSNFSSFVRQLNTYGFRKVASSRWEFSNERFRKGEKELLCEIRRRKACSTKQQQLNNAPRIQATPQESGEDQRSSSNTSSSSGYTSLVDENKRLKKENGVLSSELTVMKRKCKELLNLIAKHAQYPKKEDKQEEDDQRPMLFGVRLEVEGERDIKRQKRAEIAETATILLSQSCK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02171 242 MobiDBLite consensus disorder prediction 118 156 - -
Bva04g02171 242 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Bva04g02171 242 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02171 242 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02171 242 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02171 242 MobiDBLite consensus disorder prediction 118 155 - -
Bva04g02171 242 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 7 242 - -
Bva04g02171 242 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 242 IPR027725 -
Bva04g02171 242 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02171 242 Gene3D - 14 113 IPR036388 -
Bva04g02171 242 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02171 242 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02171 Bva-Chr4 20935819 20937620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02171 20 189 HSF AT2G41690 58.564 1.96e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva04g02171 HSF_DNA-bind 1.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02171 K09419 - vvi:100260694 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02171 04 20935819 20937620 Bva13g02415 13 18287930 18290100 BWGD
Bva04g02171 04 20935819 20937620 Bva04g02171 04 20935819 20937620 ECH