Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02164 ATGGGTAGAGGGAAGATTGAGataaaaaagattgaaaatttgaatagCAGGCAGGTCACATTCTCCAAGCGACGTAATGGGTTGCTTAAGAAAGCCAGGGAATTGTCTATTTTGTGTGATTCAGAGGTAGCAGTTATCATTTTCTCCAGCACTGGCAAGCTTTATGAGTACTCTAGCACAAGCATGGAGCACACTCTTTCAAGATACAGCAATGGCATGGAAGCAGATGTTGTGAATCAGCCTCCTAACGAGCCACCAACAGAGTTTGTGCAGCCTGATACAAACACTCTGAAGGATGAAATGACAAAGCTTCGCTTAGAATATCTAAGGATGTTGGGTAAAGAGCTTGATGGATTGAGCTTGAAAGAGCTGCAACACCTAGAAAATCAACTTAGTGAAGGGGTACTGTCTGTGAAAGACAAGAAGGAACAAGTACTTCGAGAGCAGCTTAGGAGGTCCAGACTACAGGAGCAAAAGGCAACGATGGAGAATGAAGCTCTACGTAAACAACTTGAGGAGATGCAAAATATGACGAAGACGCACTTCCTTGAATTCAATCCTTTCGAAAGGAGCTTTTCTATCAACAAAGCAAAGCCTCTTTTCAATTATGTCTCAGAAGAAAACGAGCTTTCAGATACCACCTTGCAGTTGGGGTTGTCAACAGATTTTGGTCGCAAGAAGAAGGCACTAAAGCTAGATTGCAACGACTCAGGAAGTCAAGTGGCTTCAGACTG 734 0.4223 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSILCDSEVAVIIFSSTGKLYEYSSTSMEHTLSRYSNGMEADVVNQPPNEPPTEFVQPDTNTLKDEMTKLRLEYLRMLGKELDGLSLKELQHLENQLSEGVLSVKDKKEQVLREQLRRSRLQEQKATMENEALRKQLEEMQNMTKTHFLEFNPFERSFSINKAKPLFNYVSEENELSDTTLQLGLSTDFGRKKKALKLDCNDSGSQVASD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02164 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 223 - -
Bva04g02164 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Bva04g02164 244 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g02164 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bva04g02164 244 Coils Coil 138 177 - -
Bva04g02164 244 PANTHER MADS BOX PROTEIN 1 223 - -
Bva04g02164 244 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Bva04g02164 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva04g02164 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g02164 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02164 Bva-Chr4 20905126 20908159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02164 1 219 MADS-box Gene Family AT5G13790 51.327 2.55e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva04g02164 K-box 3.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02164 - - gmx:100792278 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02164 04 20905126 20908159 Bva04g02164 04 20905126 20908159 ECH