Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02161 ATGGATAGTCTATTGAGCATGAAGGATTTCGAAGTGGAAAACAAGAATCAATCCGTAGAAGCCTTGAGAAGATGGAGGTCCGCCGTCACCATCTCCAGGAACCGCCGGAGGAGGTTTCGCTACGTCGCCGATCTCGACCAACGTTCCAAAGTGGAGGACatgaggaaaaaaatcaaGGAAACAATTCGGGTGGCTCTTTATGTTCAAAAGGCAGCAATGCAATTTATGGATGCTggtagtcgaaaggaataccGGCTATCCGAAGAGGCCAGACAAGCTGGTTTTACTATCCATCCAGACGAGATTGCATCTATTGTTCGTGACCATGATTTGAATAAGTTCAAAAAAATGGGTGGAATTCAAGGGATTGTGAGGAAACTCCATATTTCATTGGAGGAAGGCATCAGTGAAGACAGTATCAACACCAGGCAACAGATTTATGGGTTCAATCGTTATACCGAGAAACCTTCTAGAACCTTTCTGATGTTTGTGTGGGATGCACTGCACGACTTAACACTAATTATTCTTATGGTTTGTGCTCTTGTATCTATAGGTGTAGGGATCGCCACTGAAGGGTGGCCAAAGGGTATGTATGATGGCCTAGGGATCATACTTAGTGTATTCTTGGTAGTCATCGTTACCGCTGTGACTGACTACCAGCAATCTTTGCAGTTCAGAGATTTGgacaaagagaagaaaaaaataattgttcagGTCACCAGGGATGGTAAAAGGCAGAAGGTCTCAATTTATGATCTAGTAGTGGGAGATATTGTTCATCTCTCAATTGGGGATCAAGTTCCAGCGGATGGAATTTACATATCAGGATACAGTTTGTCCATTGATGAATCAAGTTTGTCAGGTGAGAGCGAGCCAGTAAATGTATATGAAGAAagaccttttcttctttcaggAACCAAAGTGCAAGATGGGTCAGGGAAGATGTTGGTCACGACTGTCGGCATGAGGACCGAATGGGGAAAATTGATGGAAACTATAAATGAGGGAGGTGAGGATGAGACCCCATTACAGGTGAAACTCAATGGAGTTGCTACAATTATTGGCAAGATTGGCTTGACTTTTGCAGTGATTACATTTCTGGTATTGATAATAAGGTTTCTGGTGGAGAAAGCACTTCATGGTGAATTTACTGATTGGTCTTCTAGTGATGCAATGAAGCTGCTGGACTACTTTGCTATTGCTGTAACTATAATAGTTGTTGCTGTCCCTGAAGGATTACCATTGGCTGTTACCCTAAGCCTTGCCTTtgcaatgaaaaaattaatgaatgataGGGCACTTGTGAGGCATCTTTCTGCATGTGAGACAATGGGTTCAGCCAGTTGCATTTGCACTGACAAGACAGGAACATTGACCACTAACCATATGGTGGTTGATAGAATATGGATATGCGAAAAATCCGTAGAGATCAAAGGTAAAGAGAGTGGAGAGAAACTGAACACTGAAATATCTGAAGAAGTTCTGAGCGTCCTTTTGCAGGCTATATTTCAGAATACTGCTTCTGAAGTAGTCAAGGATAAAGACGGAAAGGACACCATATTGGGAACGCCAACAGAAGCAGCACTATTGGAATTTGGCTTGCTTTTGGGTGGTGATTTTGATTCCCAGCGCAGAGTGTATAAGATACTCAAGGTTGAGCCATTTAATTCAGTCCGGAAGAAGATGTCTGTCCTTGTGGGTCTTCCTAATGGAGGTGTAAGAGCATTCTGCAAAGGTGCATcagaaataatattagaaatgTGTGACAAAATCATTGATGACAATGGAAAATCTGTTGAACTTCCTGAACACCAGGCTAAGAATATCTCCAATGTCATAAATGGTTTTGCCTCTGACGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGACTTAGACGGAATCCCAGAGGAAAGCAGCATCCCTGATAGTGGTTATACACTGATAGCAGTTGTAGGAATCAAGGACCCTGTTCGCCCAGGGGTCAAGGATGCTGTTAAATCCTGTTTAGCAGCTGGAATAACCATTCGTATGGTCACTGGTGACAACATATATACAGCGAGGGCCATAGCTAAAGAATGTGGTATACTCACTGAGGGAGGCGTGGCCATAGAAGGACCTGAATTTCGTAACCTGTCTGAGGAGCAAATGAATGATGTCATACCAAGAATTCGGGTAATGGCACGATCCTCACCACTTGACAAGCATACCTTAGTAACCAAATTGAGGAATGAGTTTGGCGAGGTTGTTGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCGTTGCATGAAGCAGACATTGGACTTGCTATGGGCATTGCCGGAACAGAGGTTGCCAAAGAAAATGCTGATGTCATCATAATGGATGATAATTTTACAACTATTGTCAATGTGGCCAGATGGGGAAGAGCAGTATACATAAACATTCAAAAGTTTGTGCAGTTTCAGCTAACGGTTAACGTTGTTGCTTTggttatcaattttgtttctgCATGCATCACAGGATCTGCTCCACTAACGGCCGTACAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCGCTGGCCACTGAACCTCCTAATGATGGACTAATGCAAAGGCCCCCCGTTGGAAGAGGGCAAAGCTTTATCACCAAAGCCATGTGGAGGAACATCATTGGCCAAAGTATTTATCAATTGATTGTCCTTGCAATTCTCAATTTTGATGGAAAGAGACTACTGGGAATTAATGGTTCAGATGCAACTTCTGTGCTTAACACTTTGATATTCAACTCCTTTGTATTTTTCCAGGTGTTCAACGAGATTAACAGCCGAGATATAGAAAAGATAAACGTATTCAGAGGCATGTTTGATAGCTGGATATTTGTAGCTATAATTTTGTCTACTGTAGCATTTCAAGCAATCATAGTTGAGTTGCTGGGGACTCTTGCCAGCACGGTGCCTCTAAGCTGGCAACTCTGGGTACTCAGTGTCTTACTCGGAGCAATTAGCATGCCTGTTGCAGTTATCCTCAAGTGCATCCCAGTTGAAAAAGATACCAGGAAGGAGCACCATAATGGTTACGAAGCACTCCCTTCGGGTCCCGAGCTAGCATA 3107 0.4155 MDSLLSMKDFEVENKNQSVEALRRWRSAVTISRNRRRRFRYVADLDQRSKVEDMRKKIKETIRVALYVQKAAMQFMDAGSRKEYRLSEEARQAGFTIHPDEIASIVRDHDLNKFKKMGGIQGIVRKLHISLEEGISEDSINTRQQIYGFNRYTEKPSRTFLMFVWDALHDLTLIILMVCALVSIGVGIATEGWPKGMYDGLGIILSVFLVVIVTAVTDYQQSLQFRDLDKEKKKIIVQVTRDGKRQKVSIYDLVVGDIVHLSIGDQVPADGIYISGYSLSIDESSLSGESEPVNVYEERPFLLSGTKVQDGSGKMLVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAVITFLVLIIRFLVEKALHGEFTDWSSSDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDRIWICEKSVEIKGKESGEKLNTEISEEVLSVLLQAIFQNTASEVVKDKDGKDTILGTPTEAALLEFGLLLGGDFDSQRRVYKILKVEPFNSVRKKMSVLVGLPNGGVRAFCKGASEIILEMCDKIIDDNGKSVELPEHQAKNISNVINGFASDALRTLCLAVKDLDGIPEESSIPDSGYTLIAVVGIKDPVRPGVKDAVKSCLAAGITIRMVTGDNIYTARAIAKECGILTEGGVAIEGPEFRNLSEEQMNDVIPRIRVMARSSPLDKHTLVTKLRNEFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPVGRGQSFITKAMWRNIIGQSIYQLIVLAILNFDGKRLLGINGSDATSVLNTLIFNSFVFFQVFNEINSRDIEKINVFRGMFDSWIFVAIILSTVAFQAIIVELLGTLASTVPLSWQLWVLSVLLGAISMPVAVILKCIPVEKDTRKEHHNGYEALPSGPELA 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Bva04g02161 1035 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Bva04g02161 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Bva04g02161 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Bva04g02161 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Bva04g02161 1035 SFLD Haloacid Dehalogenase 433 804 - -
Bva04g02161 1035 Gene3D - 17 78 - -
Bva04g02161 1035 SMART Cation_ATPase_N_a_2 113 188 IPR004014 -
Bva04g02161 1035 Pfam haloacid dehalogenase-like hydrolase 449 766 - -
Bva04g02161 1035 Gene3D - 461 656 IPR023299 GO:0000166
Bva04g02161 1035 Pfam E1-E2 ATPase 235 429 - -
Bva04g02161 1035 Gene3D - 166 1011 - -
Bva04g02161 1035 Gene3D - 448 797 IPR023214 -
Bva04g02161 1035 SFLD p-type atpase 433 804 IPR044492 -
Bva04g02161 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1013 IPR023298 -
Bva04g02161 1035 Gene3D - 134 334 - -
Bva04g02161 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 393 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 373 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 546 697 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 722 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva04g02161 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bva04g02161 1035 CDD P-type_ATPase_Ca_PMCA-like 140 885 - -
Bva04g02161 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Bva04g02161 1035 PANTHER CATION TRANSPORTING ATPASE 9 1020 - -
Bva04g02161 1035 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Bva04g02161 1035 SUPERFAMILY HAD-like 450 857 IPR036412 -
Bva04g02161 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 9 1020 - -
Bva04g02161 1035 Pfam Cation transporter/ATPase, N-terminus 118 183 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02161 Bva-Chr4 20883273 20889815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02161 58 1032 Primary Pumps ATPases AT3G57330 73.846 0.0 1503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02161 K01537 - gmx:100798481 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02161 04 20883273 20889815 Bva13g02428 13 18358010 18370433 BWGD
Bva04g02161 04 20883273 20889815 Bva04g02161 04 20883273 20889815 ECH