Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02143 ATGGAAAACGAGGAGGAAAACACAGTGTCAGTCACTTCTACTGAATTCCATGTTACCGCTTCTGATAGCCAAAGAATGGTTTCTCCTGTTCATACAACTCCACCCCAGCCTGTCCAACCTGTAATTCCACCTGCAATCCCACCTCCTGTTATTCCTCCCATAGCTCCAATTCCTCCAGCCCCAGTGCTCCGCCCACTGGCGCCTCTTCCTGTCCGCCCACCAGTTATTAGGCCACCTGTGTCGCAAAATGGCGAAGTATCAAGTGACTCTGATTCAGACCAAGATGATTCTCTCCCTGGGGTTAACCAGGGTACAGGGGAGTTCGAAATATCAGAAGAGAGTAGGCTGGTAAGAGAGCGGCAGGAAAAAGCAATGCAAGAACTCATGATGAAGAGGCGTGCTGCTGCTCTAGCTGTTCCTACAAATGACATGGCAGTGCGAGCACGACTTCGCCGTCTTGGTGAGCCCATTACACTTTTTGGTGAGCGGGAGATGGAGAGAAGAGACAGGTTGCGAATGATTATGGCAAAGCTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCACATGAGGATGAAGAGCTTGCAGCTTCTGCTCCAAAAGATGAAGTGGAGGAAGATCTGCAGTATCCCTTTTATACAGAAGGGTCAAAGGCTCTCCTGGATGCAAGAATTGATATTGCTAAGTATTCTGTACCAAGAGCAGCATCGCGTCTTCAGCGTGCCAGGAGAAAAAGAGATGATCCAGATGAAGATGAGGATGCAGAAATGGACTGGGCATTAAAGCAGGCCGGGAATTTGTCTCTTGATATCAGTGAGATTGGAGATGATCGGCCACTGTCTGGCTGCTCAGTCTCACCAGATGGAAAAATGATTGCTACCTGTTCTCTAAGTGGAGCTTCCAAATTGTGGAGCATGCCTCAATTGAAAAAGGTTTCTATCTTGAAGGGACATACTGAGCGTGCTACTGATGTTGCTTATTCTCCCATGTGCAATCATTTAGCTACTGCCTCTGCTGATCGGACTGCAAGGTATTGGCATGAAGACGGATCTCAGTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGTATTGCCTTCCATCCGTCAGGGAAGTACTTGGGCACAGCTAGCTTTGACAAAACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTACTTCTTCAAGAAGGCCACAGTAGGAGTATATATGGTTTAGCTTTCCACAATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCATTGGCTCGTGTTTGGGACCTTCGTACTGGGAGAAGTATACTTGCATTGGAAGGTCATGTTAAGCCGGTCCTTGGCATCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGATAACACTTGTCGCATTTGGgatttgaggaagaagaaatctcTGTATATCATTCCAGCTCACTCCAATTTAATATCACAAGTCAAATTTGAGCCCCAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTAAGGTTTGGTCAGCTCGTGATTTTAAGCCTGTGAAGACGCTATCTGGACATGAAGCGAAAGTAACTTCTGTGGATGTTGTAGCAGATGGACGTTATATTGCTACAGTCTCCCATGATAGGACCATAAAGCTGTGGTCCAGCAGAGAACAAGCTATGGACATTGACTA 1703 0.4592 MENEEENTVSVTSTEFHVTASDSQRMVSPVHTTPPQPVQPVIPPAIPPPVIPPIAPIPPAPVLRPLAPLPVRPPVIRPPVSQNGEVSSDSDSDQDDSLPGVNQGTGEFEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEELAASAPKDEVEEDLQYPFYTEGSKALLDARIDIAKYSVPRAASRLQRARRKRDDPDEDEDAEMDWALKQAGNLSLDISEIGDDRPLSGCSVSPDGKMIATCSLSGASKLWSMPQLKKVSILKGHTERATDVAYSPMCNHLATASADRTARYWHEDGSQLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSIYGLAFHNDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVVADGRYIATVSHDRTIKLWSSREQAMDID 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 525 IPR001680 GO:0005515
Bva04g02143 567 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 516 - -
Bva04g02143 567 SMART WD40_4 350 389 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 476 516 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 265 306 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 519 558 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 434 473 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 309 348 IPR001680 GO:0005515
Bva04g02143 567 SMART WD40_4 392 431 IPR001680 GO:0005515
Bva04g02143 567 SMART pr04_2 141 194 IPR014906 -
Bva04g02143 567 MobiDBLite consensus disorder prediction 1 43 - -
Bva04g02143 567 CDD WD40 280 558 - -
Bva04g02143 567 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Bva04g02143 567 Pfam WD domain, G-beta repeat 400 431 IPR001680 GO:0005515
Bva04g02143 567 Pfam WD domain, G-beta repeat 521 558 IPR001680 GO:0005515
Bva04g02143 567 Pfam WD domain, G-beta repeat 439 473 IPR001680 GO:0005515
Bva04g02143 567 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Bva04g02143 567 Pfam WD domain, G-beta repeat 352 389 IPR001680 GO:0005515
Bva04g02143 567 MobiDBLite consensus disorder prediction 81 101 - -
Bva04g02143 567 Gene3D - 256 440 IPR015943 GO:0005515
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 398 IPR001680 GO:0005515
Bva04g02143 567 MobiDBLite consensus disorder prediction 1 32 - -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Bva04g02143 567 SUPERFAMILY PRP4-like 124 179 IPR036285 -
Bva04g02143 567 ProSitePatterns Trp-Asp (WD) repeats signature. 460 474 IPR019775 -
Bva04g02143 567 Gene3D - 117 205 IPR036285 -
Bva04g02143 567 Gene3D - 441 565 IPR015943 GO:0005515
Bva04g02143 567 MobiDBLite consensus disorder prediction 64 116 - -
Bva04g02143 567 PANTHER BNAC04G01920D PROTEIN 106 561 - -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 436 - -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 482 IPR001680 GO:0005515
Bva04g02143 567 ProSitePatterns Trp-Asp (WD) repeats signature. 376 390 IPR019775 -
Bva04g02143 567 SUPERFAMILY WD40 repeat-like 275 557 IPR036322 GO:0005515
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 347 - -
Bva04g02143 567 Pfam pre-mRNA processing factor 4 (PRP4) like 146 172 IPR014906 -
Bva04g02143 567 PRINTS G protein beta WD-40 repeat signature 460 474 IPR020472 -
Bva04g02143 567 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Bva04g02143 567 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 567 - -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 347 IPR001680 GO:0005515
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 558 IPR001680 GO:0005515
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 394 - -
Bva04g02143 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 441 475 - -
Bva04g02143 567 PANTHER WD40 REPEAT PROTEIN 106 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02143 Bva-Chr4 20789820 20793974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02143 398 563 U-box Gene Family AT1G04510 25.143 1.23e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02143 K12662 - gmx:100788948 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02143 04 20789820 20793974 Bva04g02143 04 20789820 20793974 ECH