Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02108 ATGTTAGAGTTATCCCCTCCTCTGTTCTCAACCATTGGATGGCCCATGGAGTTGGAAGAGGCCACAAATCATAACCACAACATTAATGATACTGAGACATATGACTACTCATTTCCTCATCATTTCTGTTCGCCTAATAAACAAGCACAGCCGCAGATAGAGCTTGAAAGGCCCAACATGGTCAAGAAGGTTAATCACAATGCTACTGAACGTGATCGCCGCAAGAAGATCAATTGCTTGTATTCCTCACTTCGTTCACTGCTTCCTAAGGCAGATCAAACGaaaaaattaagcattCCTTCAACGATTACACGAGTCCTGAAGTATATATCGGAATTGCAGCAGGCAGTGGAAGGACTTGTGAAGAAAAAGGAGGAGCTTTTACGGAGAATTTCTAGGCAAGGAGATCAGAACGAAGAATCTCAAAGGAAAATTGCCCTTTACAACACTTCATTTGCTGTTTCAACTACTAGGCTCAATGATTGTGAAGCTGTTATTCAGATTTCTTCCAATAAAGCCCACAAAACTCCACTATCTGAGGTCTTACTGTGTTTAGAAAAAGATGGGTCTTTGTTGCTGAATGCTTCTTCCTTTGAGACctttgctgctgctgctgggAGAGTCTTCTATAACTTGCATTTCCAGCTGGTccaaaaatcttataaattagAGTCAGATATGCTAAGTGAGAAGCTTATGTCAATATATGAGAAGAAGGAAGGAATCTTCTG 731 0.383 MLELSPPLFSTIGWPMELEEATNHNHNINDTETYDYSFPHHFCSPNKQAQPQIELERPNMVKKVNHNATERDRRKKINCLYSSLRSLLPKADQTKKLSIPSTITRVLKYISELQQAVEGLVKKKEELLRRISRQGDQNEESQRKIALYNTSFAVSTTRLNDCEAVIQISSNKAHKTPLSEVLLCLEKDGSLLLNASSFETFAAAAGRVFYNLHFQLVQKSYKLESDMLSEKLMSIYEKKEGIF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02108 243 Coils Coil 110 144 - -
Bva04g02108 243 CDD bHLH_AtORG2_like 62 138 - -
Bva04g02108 243 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 238 - -
Bva04g02108 243 Gene3D - 54 146 IPR036638 GO:0046983
Bva04g02108 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 238 IPR015660 GO:0003700|GO:0006357
Bva04g02108 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
Bva04g02108 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Bva04g02108 243 SMART finulus 67 119 IPR011598 GO:0046983
Bva04g02108 243 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02108 Bva-Chr4 20594151 20595114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02108 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.467 4.77e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02108 HLH 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02108 - - gmx:100803424 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02108 04 20594151 20595114 Bva04g02108 04 20594151 20595114 ECH